Miyakogusa Predicted Gene
- Lj0g3v0160829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0160829.1 Non Chatacterized Hit- tr|D7KQA7|D7KQA7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.89,4e-19,SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN,SSXT;
SSXT,SSXT; seg,NULL,gene.Ljchr0_pseudomol_20120828.path1.gene16206.1
(462 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS325485 similar to UniRef100_A7QVN6 Cluster: Chromosom... 862 0.0
gnl|LJGI|TC66497 similar to UniRef100_A7QVR7 Cluster: Chromosome... 295 1e-79
gnl|LJGI|GO025971 similar to UniRef100_A7QVN6 Cluster: Chromosom... 258 3e-68
>gnl|LJGI|FS325485 similar to UniRef100_A7QVN6 Cluster: Chromosome chr14 scaffold_190,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_190, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 824
Score = 862 bits (435), Expect = 0.0
Identities = 462/473 (97%), Gaps = 11/473 (2%)
Strand = Plus / Plus
Query: 1 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 382
Query: 61 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 442
Query: 121 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 502
Query: 181 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 562
Query: 241 ggtc-----------agtggaattgtgcagcagcaaggtgcacactacatgcagcaggct 289
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtcagtatcctccaagtggaattgtgcagcagcaaggtgcacactacatgcagcaggct 622
Query: 290 caacaacaggctcagcagatgacacaacagcaacaactcatggcggcacgctcttccctt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caacaacaggctcagcagatgacacaacagcaacaactcatggcggcacgctcttccctt 682
Query: 350 ttgtacactcagcagcagccttactccacacttcaacagcagcaagccttgcagcacagc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtacactcagcagcagccttactccacacttcaacagcagcaagccttgcagcacagc 742
Query: 410 cagctcggtatgagttccggtggaagttccggccttcacatgttccaaagtga 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagctcggtatgagttccggtggaagttccggccttcacatgttccaaagtga 795
>gnl|LJGI|TC66497 similar to UniRef100_A7QVR7 Cluster: Chromosome chr7 scaffold_192,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr7 scaffold_192, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 1288
Score = 295 bits (149), Expect = 1e-79
Identities = 223/247 (90%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 1 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 233 atgcagcagcacctgatgcagatgcagcccatgatggctgcctactaccccaac---aac 289
Query: 61 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 120
|||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 290 gtcaccactgatcacattcagcagtatctggatgagaacaaatccttaattctgaagatt 349
Query: 121 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 180
|| ||||||||||| ||||| ||||||| ||||||||| ||| | ||| ||||||| |||
Sbjct: 350 gtcgaaagccagaattctggtaagctgaccgagtgtgccgagtaccaagcaaggctacag 409
Query: 181 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 240
||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||
Sbjct: 410 agaaatctcatgtaccttgctgcaatagctgactctcaaccccaaccacctaacatgcct 469
Query: 241 ggtcagt 247
|| ||||
Sbjct: 470 ggccagt 476
>gnl|LJGI|GO025971 similar to UniRef100_A7QVN6 Cluster: Chromosome chr14 scaffold_190,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_190, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (63%)
Length = 688
Score = 258 bits (130), Expect = 3e-68
Identities = 178/194 (91%)
Strand = Plus / Plus
Query: 54 caacaacgtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattct 113
||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 143 caacaacgtcaccactgatcacattcagcagtatctggatgagaacaaatccttaattct 202
Query: 114 gaagattgttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaag 173
||||||||| ||||||||||| ||||| ||||||| ||||||||| ||||| ||| ||||
Sbjct: 203 gaagattgtcgaaagccagaattctggcaagctgaccgagtgtgccgagaaccaagcaag 262
Query: 174 gctccagagaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccac 233
||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 263 gctacagagaaatctcatgtaccttgctgcaatagctgactctcaaccccaaccacccaa 322
Query: 234 catgcctggtcagt 247
||||||||| ||||
Sbjct: 323 catgcctggccagt 336