Miyakogusa Predicted Gene
- Lj0g3v0159849.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0159849.1 Non Chatacterized Hit- tr|F6HFJ5|F6HFJ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,26.22,3e-17,PPR: pentatricopeptide repeat domain,Pentatricopeptide
repeat; PPR_2,Pentatricopeptide repeat; PPR,P,CUFF.9913.1
(1783 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|CB826792 similar to UniRef100_A7PSQ6 Cluster: Chromosom... 961 0.0
gnl|LJGI|TC65231 428 e-119
>gnl|LJGI|CB826792 similar to UniRef100_A7PSQ6 Cluster: Chromosome chr6 scaffold_28,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_28, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 485
Score = 961 bits (485), Expect = 0.0
Identities = 485/485 (100%)
Strand = Plus / Plus
Query: 1079 ctcttgcgaagggtaggcttgtgaaagaagctgtcaatctccttcaaacaatggagaaaa 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgcgaagggtaggcttgtgaaagaagctgtcaatctccttcaaacaatggagaaaa 60
Query: 1139 acaatgttactcctgatgttgttacttacaactcgctgatcaagcccctctgcaaaaacc 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaatgttactcctgatgttgttacttacaactcgctgatcaagcccctctgcaaaaacc 120
Query: 1199 gcaaaattgatgaagccaaagaagtttttaatgatatgatgaagcggaacataaccccaa 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaaaattgatgaagccaaagaagtttttaatgatatgatgaagcggaacataaccccaa 180
Query: 1259 caattcggacttttcatgctttcttccgaatattaagggttgaggaagaagtatttgagc 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caattcggacttttcatgctttcttccgaatattaagggttgaggaagaagtatttgagc 240
Query: 1319 ttctggacaaaatgagagagctagggtgctacccaactattgagacttacataatgttga 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctggacaaaatgagagagctagggtgctacccaactattgagacttacataatgttga 300
Query: 1379 taagaaagttttgccgctggcgcaagctggatgaagtctttaagatatggaatatgatga 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taagaaagttttgccgctggcgcaagctggatgaagtctttaagatatggaatatgatga 360
Query: 1439 gggaagacggagtcagccatgatcgcagctcttatattgtactgattcatgggctgtttc 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggaagacggagtcagccatgatcgcagctcttatattgtactgattcatgggctgtttc 420
Query: 1499 tgaatggaaaggtgaaggaagcacacgattattacatagagatgcaaaggaaagggttcc 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaatggaaaggtgaaggaagcacacgattattacatagagatgcaaaggaaagggttcc 480
Query: 1559 tccct 1563
|||||
Sbjct: 481 tccct 485
>gnl|LJGI|TC65231
Length = 673
Score = 428 bits (216), Expect = e-119
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 1 atgatcagaatccgatctaagctatcttctgtgctgcaacgcatcagccagaccaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atgatcagaatccgatctaagctatcttctgtgctgcaacgcatcagccagaccaaacaa 362
Query: 61 ggcgcgaatcactttcgtcgtcgtttagttaatcccaatgtttttgacactgctttagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggcgcgaatcactttcgtcgtcgtttagttaatcccaatgtttttgacactgctttagct 422
Query: 121 cctccactaaattttggttacttaccgaggctcttttcaagttcatcttcaatcagaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctccactaaattttggttacttaccgaggctcttttcaagttcatcttcaatcagaagc 482
Query: 181 cttggggtgtcaactgattcccctgctctaggatca 216
||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttggggtgtcaactgattcccctgctctaggatca 518
Score = 188 bits (95), Expect = 8e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 277 aagaatggtactagattacatataagggatgttgttcttgcccaagatgttaaaaccatt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagaatggtactagattacatataagggatgttgttcttgcccaagatgttaaaaccatt 638
Query: 337 ttggatataatgcacgaaccgggttctcgaccatc 371
|||||||||||||||||||||||||||||||||||
Sbjct: 639 ttggatataatgcacgaaccgggttctcgaccatc 673