Miyakogusa Predicted Gene

Lj0g3v0158509.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0158509.1 Non Chatacterized Hit- tr|B9RTF6|B9RTF6_RICCO
Pentatricopeptide repeat-containing protein, putative
,26.42,1e-18,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; SUBFAMI,CUFF.9800.1
         (1284 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71210 weakly similar to UniRef100_A7NSL4 Cluster: Chr...   466   e-130

>gnl|LJGI|TC71210 weakly similar to UniRef100_A7NSL4 Cluster: Chromosome chr18
           scaffold_1, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (24%)
          Length = 588

 Score =  466 bits (235), Expect = e-130
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctgagagaaatgtcgtgacttggaatgccatgattagtgggtacatgagaaatggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 346 atgcctgagagaaatgtcgtgacttggaatgccatgattagtgggtacatgaaaaatggg 405

                                                                       
Query: 61  gacatggaatctgcttcgcttgtgtttgaggagatgccggggaaaactggggtgacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gacatggaatctgcttcgcttgtgtttgaggagatgccggggaaaactggggtgacttgg 465

                                                                       
Query: 121 agtcagatgattggtgggtttgctaggaatggggacactgccactgctaggaggttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 466 agtcagatgattggtgggtttgctaggaatggggacactgccactgctaggaggttggtt 525

                                                                       
Query: 181 gatgaggctccacatgagttgaagggtgttgtgacatggactgtgatggttgatggatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatgaggctccacatgagttgaagggtgttgtgacatggactgtgatggttgatggatat 585

              
Query: 241 gct 243
           |||
Sbjct: 586 gct 588