Miyakogusa Predicted Gene

Lj0g3v0158019.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0158019.1 CUFF.9773.1
         (1012 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV774371 similar to UniRef100_Q6RZV0 Cluster: Transposa...   624   e-178

>gnl|LJGI|AV774371 similar to UniRef100_Q6RZV0 Cluster: Transposase-like protein; n=1;
           Musa acuminata|Rep: Transposase-like protein - Musa
           acuminata (Banana), partial (3%)
          Length = 492

 Score =  624 bits (315), Expect = e-178
 Identities = 378/399 (94%), Gaps = 3/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaggggctggaaattcacaaaacactagtaatgctgctactgcttcttctaatgta 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  atgtcaggggctgtaaattcacaaaacactagtaatgctgctactgcttcttctaatgta 153

                                                                       
Query: 61  agcggaagatcgaactatcccggtagaagaaatgatcctggg-tggaaacatgggataga 119
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 154 agcggaagatcgaactatcccggtagaagaaatgatcctgggatggaaacatgggataga 213

                                                                       
Query: 120 tgttcttgg-aaatggcaaaaaagttcgctgcaactattgtcatagcgaattctggggag 178
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgttcttgggaaatggcaaaaaagttcgctgcaactattgtcatagcgaattctggggag 273

                                                                       
Query: 179 gaattaatagattcaagttacaccttgcttgttatggagaagatgctgggcgatgtgtta 238
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 274 gaattaatagattcaagttacaccttggctgttatggagaagatgctgggcgatgtgtta 333

                                                                       
Query: 239 gtgtcccagatgatgtgatgcaattgtttaagcaaattgtgtctaatgctgaagatgcnn 298
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  
Sbjct: 334 gtgtcccagatgatgtgatgcaatggtttaagcaaattgtgtctaatgctgaagatgcaa 393

                                                                       
Query: 299 nnnnnnnnnngaggcatttgattgacattagtgcagaaaatgaagtggaggttgatgttg 358
                     ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 394 aaaataaaaagaggcatttgattgacattagtgcagaaaatgacgtggaggttgatgtag 453

                                                  
Query: 359 ctaggcatcaaattcaaa-gcaaagggaaaggtcttctt 396
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 454 ctaggcatcaaattcaaaggcaaagggaaaggtcttctt 492