Miyakogusa Predicted Gene
- Lj0g3v0157999.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0157999.1 Non Chatacterized Hit- tr|K4AMF8|K4AMF8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si040099,40.23,7e-18,coiled-coil,NULL; HLH,Helix-loop-helix domain;
no description,Helix-loop-helix domain; helix loop he,CUFF.9769.1
(777 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58238 weakly similar to UniRef100_A7QJJ0 Cluster: Chr... 460 e-129
gnl|LJGI|TC68244 similar to UniRef100_A7QJJ0 Cluster: Chromosome... 404 e-112
gnl|LJGI|TC77882 weakly similar to UniRef100_A7QJJ0 Cluster: Chr... 163 2e-39
gnl|LJGI|TC78086 weakly similar to UniRef100_A7QJJ0 Cluster: Chr... 131 7e-30
gnl|LJGI|DC595998 weakly similar to UniRef100_A7QJJ0 Cluster: Ch... 96 4e-19
gnl|LJGI|BP074356 weakly similar to UniRef100_A0B619 Cluster: Ra... 66 3e-10
>gnl|LJGI|TC58238 weakly similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (59%)
Length = 1105
Score = 460 bits (232), Expect = e-129
Identities = 488/573 (85%), Gaps = 27/573 (4%)
Strand = Plus / Plus
Query: 201 caagaaacttaaccacaatgctagtgaacgtgatcgccgcaaaaagatcaatagcttgat 260
|||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 250 caagaagcttagccacaatgctagcgaacgtgaccgccgcaaaaagatcaatagcttgat 309
Query: 261 tgcttcacttcgttcactgcttcctgcagggcaagatcaaatgnnnnnnntgagcattcc 320
|||||||||||||||||| ||||| ||||| |||||||| | ||||||||||
Sbjct: 310 tgcttcacttcgttcacttcttcc---agggccagatcaaacgaaaaaaatgagcattcc 366
Query: 321 ggccacaatttctggagtcataaagtatttaccagagttacaacagcaagtaaaaggact 380
|| |||||||| ||||||||| || |||| ||||||||| ||||||| ||||||||
Sbjct: 367 agctacaatttcccaagtcataaaatacatacctgagttacaaaagcaagtgaaaggact 426
Query: 381 aactaagaaaaaagagaagcttctatcaagaatttctcagcaaggagatgcagtaaacga 440
|||||||||||| |||||||||||||| | || | ||| ||| ||||||||||||||||
Sbjct: 427 aactaagaaaaaggagaagcttctatcgaaaactactcgccaaagagatgcagtaaacga 486
Query: 441 agaatctcgaaaaaggaagaagtttattaatccccatcacaactctgcagattttatagt 500
|||||||| ||||||||||| || |||||||||||| ||| |||| ||||
Sbjct: 487 agaatctc---aaaggaagaagatt------ccccatcacaaccctg---atttcgtagt 534
Query: 501 ttcaaatagctggctcaatgattgtgaggctgcaattcatattatttcctctaattatga 560
||||||||| |||||||||||| ||||||||| ||||||||| |||||| ||
Sbjct: 535 ttcaaatagttggctcaatgatactgaggctgctattcatatt---tcctcttat----- 586
Query: 561 ggaggctcacaatcacaagactccactgcccgagatcatactgtgtttagaaaataatgg 620
||||||||| ||||||||||||||| | |||||| | |||||| |||||||||||||
Sbjct: 587 -gaggctcac---cacaagactccactgtctgagatcttgctgtgtctagaaaataatgg 642
Query: 621 gtattttctgctaaatgcttcttctactgaaacctttggaggaagagtcttctacatctt 680
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||| | |||
Sbjct: 643 gtatttactgctaaatgcttcttctactaaaacctttggaggaaggatcttctataactt 702
Query: 681 gcattttcaagtggaaaaaactcatagattagagtctgatattataactcagaagctttt 740
|||||| || |||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct: 703 gcatttccaggtggaaaaaactcagagattagaggctgatattctaactcagaagctttt 762
Query: 741 gtcaatatatgagaagaagcaaagaatgttcta 773
|||||||||||||||||||||||||||||||||
Sbjct: 763 gtcaatatatgagaagaagcaaagaatgttcta 795
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 25 ttctcatactcaaacatggaatgtctcttaga 56
|||||||||||||||||||| |||||||||||
Sbjct: 65 ttctcatactcaaacatggattgtctcttaga 96
>gnl|LJGI|TC68244 similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 1131
Score = 404 bits (204), Expect = e-112
Identities = 481/573 (83%), Gaps = 27/573 (4%)
Strand = Plus / Plus
Query: 201 caagaaacttaaccacaatgctagtgaacgtgatcgccgcaaaaagatcaatagcttgat 260
|||||| |||| |||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct: 243 caagaagcttagccacaatgctagcgaacgtgaccgccgcaaaaagatcaataccttgat 302
Query: 261 tgcttcacttcgttcactgcttcctgcagggcaagatcaaatgnnnnnnntgagcattcc 320
||| |||||||||||||| ||||| | | |||||||||| | ||||||||||
Sbjct: 303 tgcctcacttcgttcacttcttcccgga---caagatcaaacgaagaaaatgagcattcc 359
Query: 321 ggccacaatttctggagtcataaagtatttaccagagttacaacagcaagtaaaaggact 380
|| |||||||| ||||||||| || |||| ||||||||| ||||||| |||||||
Sbjct: 360 agctacaatttcccaagtcataaaatacatacctgagttacaaaagcaagtgaaaggaca 419
Query: 381 aactaagaaaaaagagaagcttctatcaagaatttctcagcaaggagatgcagtaaacga 440
||| |||||||| |||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 420 aacgaagaaaaaggagaagcttctaccgaaaattattagtcaaggagatgcagtaaacga 479
Query: 441 agaatctcgaaaaaggaagaagtttattaatccccatcacaactctgcagattttatagt 500
|||||||| | |||||||| || |||||||||||||||| |||| |||||
Sbjct: 480 agaatctccag---ggaagaagatt------ccccatcacaactctg---atttcatagt 527
Query: 501 ttcaaatagctggctcaatgattgtgaggctgcaattcatattatttcctctaattatga 560
||||||||| |||||||||||| |||||||||| ||||||||| |||||| ||
Sbjct: 528 ttcaaatagttggctcaatgatagtgaggctgctattcatatt---tcctcttat----- 579
Query: 561 ggaggctcacaatcacaagactccactgcccgagatcatactgtgtttagaaaataatgg 620
||||| ||| |||||||||||||| | |||||| | |||||||| |||||||||||
Sbjct: 580 -gaggcccac---cacaagactccactaactgagatcttgctgtgtttggaaaataatgg 635
Query: 621 gtattttctgctaaatgcttcttctactgaaacctttggaggaagagtcttctacatctt 680
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||
Sbjct: 636 gtattttctgctaaatgcttcttccactgaaacctttggaggaaggatcttctataactt 695
Query: 681 gcattttcaagtggaaaaaactcatagattagagtctgatattataactcagaagctttt 740
|||||| || |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 696 gcatttccaggtggaaaaaactcagagattagagtctgatattctaactcagaagctttt 755
Query: 741 gtcaatatatgagaagaagcaaagaatgttcta 773
|||||||||||||||||||||| | ||||||||
Sbjct: 756 gtcaatatatgagaagaagcaatggatgttcta 788
Score = 151 bits (76), Expect = 8e-36
Identities = 103/112 (91%)
Strand = Plus / Plus
Query: 17 ctcctgtgttctcatactcaaacatggaatgtctcttagatgatgaaccctttaatcata 76
||||||||||||||||||||||||||||| ||||||||||||| || ||||| | ||||
Sbjct: 56 ctcctgtgttctcatactcaaacatggaaagtctcttagatgaggatcccttcagccata 115
Query: 77 accagaacaacttcaataaagaaagggtgtcctcatcagagtactcatttcc 128
|||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 116 accagagctacttcaataaagaaagtgtgtcctcatcagagtactcatttcc 167
>gnl|LJGI|TC77882 weakly similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (57%)
Length = 959
Score = 163 bits (82), Expect = 2e-39
Identities = 160/186 (86%)
Strand = Plus / Plus
Query: 579 gactccactgcccgagatcatactgtgtttagaaaataatgggtattttctgctaaatgc 638
||||||||| | |||||| | |||| ||||||||| ||||| |||||||||| |||||
Sbjct: 589 gactccactatctgagatcttgctgtatttagaaaacaatggccattttctgctgaatgc 648
Query: 639 ttcttctactgaaacctttggaggaagagtcttctacatcttgcattttcaagtggaaaa 698
||||| |||||||||||| |||||| |||||||||| | ||||||| || ||||||||
Sbjct: 649 ctcttcctctgaaacctttgaaggaagggtcttctacaacctgcatttccaggtggaaaa 708
Query: 699 aactcatagattagagtctgatattataactcagaagcttttgtcaatatatgagaagaa 758
| |||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 709 agctcatagaatagagtcctgtattctaactgagaagcttttgtcaatatatgagaagaa 768
Query: 759 gcaaag 764
||||||
Sbjct: 769 gcaaag 774
Score = 89.7 bits (45), Expect = 2e-17
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Plus
Query: 200 ccaagaaacttaaccacaatgctagtgaacgtgatcgccgcaaaaagatcaatagcttga 259
||||||| |||||||||||||| ||||||||| |||| || || |||||||||| |||||
Sbjct: 240 ccaagaagcttaaccacaatgccagtgaacgtaatcgacgtaacaagatcaataccttga 299
Query: 260 ttgcttcacttcgttcactgcttcctgcagggcaagatcaaatgnnnnnnntgagcattc 319
|| ||| |||||||||||| ||||| | || |||||||| | |||||||||
Sbjct: 300 ttactttacttcgttcacttcttcccg---gggtagatcaaacgaaaaaaatgagcattc 356
Query: 320 cggccacaatttctggagtcataaagtatttaccagagttacaacagcaagtaaaaggac 379
||| |||||||| ||||| || || |||| |||||| |||| |||||| ||||||
Sbjct: 357 aggcgacaatttcccaagtcacaagatacatacctgagttagaacaacaagtagaaggac 416
Query: 380 taactaagaaaaaagagaagcttctatcaagaatttctcagcaa 423
| | || |||| ||||| |||||| ||||||||||||| ||||
Sbjct: 417 tgattaggaaacaagaggagcttcggtcaagaatttctcggcaa 460
>gnl|LJGI|TC78086 weakly similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (16%)
Length = 416
Score = 131 bits (66), Expect = 7e-30
Identities = 105/118 (88%)
Strand = Plus / Plus
Query: 647 ctgaaacctttggaggaagagtcttctacatcttgcattttcaagtggaaaaaactcata 706
|||||||||||| |||||| |||||||||| | ||||||| || ||||||||| ||||||
Sbjct: 8 ctgaaacctttgaaggaagggtcttctacaacctgcatttccaggtggaaaaagctcata 67
Query: 707 gattagagtctgatattataactcagaagcttttgtcaatatatgagaagaagcaaag 764
|| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 68 gaatagagtcctgtattctaactgagaagcttttgtcaatatatgagaagaagcaaag 125
>gnl|LJGI|DC595998 weakly similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (30%)
Length = 563
Score = 95.6 bits (48), Expect = 4e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 201 caagaaacttaaccacaatgctagtgaacgtgatcgccgcaaaaagatcaatagcttgat 260
||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||| | ||
Sbjct: 220 caagaaaattagccacaatgctaatgaacgtgatcgccgcaagaagatcaatagcataat 279
Query: 261 tgcttcacttcgttcactgcttcc 284
| ||||||| |||||||| |||||
Sbjct: 280 ttcttcactccgttcacttcttcc 303
>gnl|LJGI|BP074356 weakly similar to UniRef100_A0B619 Cluster: Radical SAM domain
protein; n=1; Methanosaeta thermophila PT|Rep: Radical
SAM domain protein - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT)), partial (5%)
Length = 399
Score = 65.9 bits (33), Expect = 3e-10
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 691 gtggaaaaaactcatagattagagtctgatattataactcagaagcttttgtcaatatat 750
||||||||| |||| || ||||| ||| ||||| ||||||||| |||| |||||||| ||
Sbjct: 392 gtggaaaaagctcaaaggttagattctaatattctaactcagatgcttctgtcaatacat 333
Query: 751 gagaagaag 759
|||||||||
Sbjct: 332 gagaagaag 324