Miyakogusa Predicted Gene

Lj0g3v0155509.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0155509.1 tr|A1ZXC3|A1ZXC3_9BACT Two component regulator
three Y motif family OS=Microscilla marina ATCC 23134,36,0.32,
,CUFF.9605.1
         (441 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73980                                                      424   e-118
gnl|LJGI|AV764879                                                     244   4e-64

>gnl|LJGI|TC73980 
          Length = 548

 Score =  424 bits (214), Expect = e-118
 Identities = 214/214 (100%)
 Strand = Plus / Minus

                                                                       
Query: 228 tccactttctctttatctaaaaatctgtgggttcctccatgagcaccggggcaccatttg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tccactttctctttatctaaaaatctgtgggttcctccatgagcaccggggcaccatttg 489

                                                                       
Query: 288 ggtgatgggtgatgatgggtttggtgaactaagcctgaaataccagattggaacccagaa 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggtgatgggtgatgatgggtttggtgaactaagcctgaaataccagattggaacccagaa 429

                                                                       
Query: 348 accccagatcggaaaacaaccgacaccggcctccatacccaaccacactaagccatcaat 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 accccagatcggaaaacaaccgacaccggcctccatacccaaccacactaagccatcaat 369

                                             
Query: 408 tacccaacaaacaagcacgaacccagaaacctaa 441
           ||||||||||||||||||||||||||||||||||
Sbjct: 368 tacccaacaaacaagcacgaacccagaaacctaa 335


>gnl|LJGI|AV764879 
          Length = 307

 Score =  244 bits (123), Expect = 4e-64
 Identities = 207/235 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattttgatttcaatttacaaccgagaatttcttcatcatcaccatcaatcttccatt 60
           ||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||| ||
Sbjct: 67  atgattttgatttcaatttacaaccgaaaatttttttatcatcaccattaattttccttt 126

                                                                       
Query: 61  ctcttccaacccattcttcagttttaccatcttcaactttcatcaatgcttttcatcttc 120
            | |||||||||||| || ||||||||||| ||||||||| ||||||| |||| || || 
Sbjct: 127 tttttccaacccattttttagttttaccattttcaactttaatcaatggtttttatttta 186

                                                                       
Query: 121 aagcaacacccacccaggttcaaccccaaacccataaatcatacaaatcatgaaaggaag 180
           ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| 
Sbjct: 187 aagcaacacccacccaggttcaaccccaaacccttaaatcattcaaatcttgaaaggaaa 246

                                                                  
Query: 181 aagaagaaaggaaggtgggccagatcgtcatcgctctgctccattgctccacttt 235
           || || |||||  || |||||| | || |||||||||||||||||||||||||||
Sbjct: 247 aaaaaaaaaggggggggggccaaaacggcatcgctctgctccattgctccacttt 301