Miyakogusa Predicted Gene
- Lj0g3v0154719.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0154719.1 tr|A9S0J3|A9S0J3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72978
,40.17,0.0000000000001,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL,CUFF.9567.1
(646 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73901 similar to UniRef100_A7PB20 Cluster: Chromosome... 1207 0.0
gnl|LJGI|TC78085 similar to UniRef100_A7PB20 Cluster: Chromosome... 537 e-152
gnl|LJGI|AV764861 392 e-108
gnl|LJGI|TC73412 homologue to UniRef100_A7PB20 Cluster: Chromoso... 361 4e-99
gnl|LJGI|AV773927 109 2e-23
gnl|LJGI|DC595479 homologue to UniRef100_A7PB20 Cluster: Chromos... 76 3e-13
>gnl|LJGI|TC73901 similar to UniRef100_A7PB20 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (94%)
Length = 1471
Score = 1207 bits (609), Expect = 0.0
Identities = 612/613 (99%)
Strand = Plus / Plus
Query: 34 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 639
Query: 94 gattctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gattctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 699
Query: 154 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 759
Query: 214 tcccaaaagagaaacttgggtgaattccggtctgaggagagattgatgattgaacaggca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tcccaaaagagaaacttgggtgaattccggtctgaggagagattgatgattgaacaggca 819
Query: 274 cttctccaagaagaaaagcgagctctgatggccggtcgtgaagcacatgaggctaaactt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cttctccaagaagaaaagcgagctctgatggccggtcgtgaagcacatgaggctaaactt 879
Query: 334 cggatggcagcaatgtatcaagctgagcaggcccgggcagaatcacactctcatgctgaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 cggatggcagcaatgtatcaagctgagcaggcccgggcagaatcacactctcatgctgaa 939
Query: 394 atgatgtcgcgagcccccataagagggagtgcacttgggtcccaaggcagtggtgatatg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 atgatgtcgcgagcccccataagagggagtgcacttgggtcccaaggcagtggtgatatg 999
Query: 454 atgggccatgacatgggagagcaggatcagggaggtcacccaggtgatatgatgaatgga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 atgggccatgacatgggagagcaggatcagggaggtcacccaggtgatatgatgaatgga 1059
Query: 514 tgggggaacaatgcacacagagaagagaaggagccatctgaggatttcttgaatgatgaa 573
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 tgggggaacaatgcacagagagaagagaaggagccatctgaggatttcttgaatgatgaa 1119
Query: 574 gctgagaatggagacacaggcacacaggatggttggcgtgaagttggtgaatttgatttg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 gctgagaatggagacacaggcacacaggatggttggcgtgaagttggtgaatttgatttg 1179
Query: 634 aatgctaggtgat 646
|||||||||||||
Sbjct: 1180 aatgctaggtgat 1192
>gnl|LJGI|TC78085 similar to UniRef100_A7PB20 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (90%)
Length = 1322
Score = 537 bits (271), Expect = e-152
Identities = 325/342 (95%), Gaps = 2/342 (0%)
Strand = Plus / Plus
Query: 307 ggtcgtgaagcacatgaggctaaacttcggatggcagcaatgtatcaagctgagcaggcc 366
||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 852 ggtcgtgaagcccatgaggctaaactccggatggcggccatgtatcaagctgagcaggcc 911
Query: 367 cgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagagggagtgca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 cgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagagggagtgca 971
Query: 427 cttgggtcccaaggcagtggtgatatgatgggccatgacatgggagagcaggatcaggga 486
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 972 cttgggtcccatggccgtggtgacatgatgggccatgacatgggagagcaggatcaggga 1031
Query: 487 ggtcacccaggtgatatgatgaatggatgggggaacaatgcacacagagaagagaaggag 546
||| |||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||
Sbjct: 1032 ggtaacccaggtgatatgatgaatggatggggaaaccatgcacagagagaagaaaaggag 1091
Query: 547 ccatctgaggatttcttgaatgatgaagctgagaatggagacacaggcacacaggatggt 606
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1092 ccatctgaggatttcttgaatgatgaagctgagaatggagaccccggcacacaggatggt 1151
Query: 607 tggcgtgaag--ttggtgaatttgatttgaatgctaggtgat 646
|||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1152 tggcgtgaagtatcggtgaatttgatttgaatgctaggtgat 1193
Score = 513 bits (259), Expect = e-145
Identities = 265/267 (99%)
Strand = Plus / Plus
Query: 34 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 605
Query: 94 gattctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 153
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gactctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 665
Query: 154 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 725
Query: 214 tcccaaaagagaaacttgggtgaattccggtctgaggagagattgatgattgaacaggca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcccaaaagagaaacttgggtgaattccggtctgaggagagattgatgattgaacaggca 785
Query: 274 cttctccaagaagaaaagcgagctctg 300
||||||||||||||||| |||||||||
Sbjct: 786 cttctccaagaagaaaaacgagctctg 812
>gnl|LJGI|AV764861
Length = 462
Score = 392 bits (198), Expect = e-108
Identities = 309/346 (89%)
Strand = Plus / Minus
Query: 301 atggccggtcgtgaagcacatgaggctaaacttcggatggcagcaatgtatcaagctgag 360
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||
Sbjct: 439 atggccggtcgtgaagcacaaaaggttaaatttcggatggcagcaatgtatcaagttgag 380
Query: 361 caggcccgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagaggg 420
||||||||||||||||||| || |||| |||||||||||||||||||||| ||| ||||
Sbjct: 379 caggcccgggcagaatcaccctttcattttgaaatgatgtcgcgagcccccctaaaaggg 320
Query: 421 agtgcacttgggtcccaaggcagtggtgatatgatgggccatgacatgggagagcaggat 480
||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct: 319 agtgcacttgggtcccaagccagtggtgatataatgggccatgccatgggagagcaggat 260
Query: 481 cagggaggtcacccaggtgatatgatgaatggatgggggaacaatgcacacagagaagag 540
|||||||||| ||| |||||||| || |||||||||||| |||||| | || | || |
Sbjct: 259 cagggaggtccccccggtgatattattaatggatggggggccaatgcccccaaaaaaaaa 200
Query: 541 aaggagccatctgaggatttcttgaatgatgaagctgagaatggagacacaggcacacag 600
|||||||| ||||||||||| || ||| ||||||||||||||||| || ||||| | |||
Sbjct: 199 aaggagccctctgaggatttttttaattatgaagctgagaatggaaacccaggcccccag 140
Query: 601 gatggttggcgtgaagttggtgaatttgatttgaatgctaggtgat 646
|||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 139 aatggttggggtgaagttggtgaattttatttgaatgctaggtgat 94
>gnl|LJGI|TC73412 homologue to UniRef100_A7PB20 Cluster: Chromosome chr16
scaffold_10, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr16 scaffold_10, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (38%)
Length = 685
Score = 361 bits (182), Expect = 4e-99
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 34 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agattattgccatatcatgttgtggcagactatgaagcagaagaggatgataggatcctt 559
Query: 94 gattctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 153
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gactctgacaccactggccaagtgctttcaaggtcccagcagtgggataataatattgct 619
Query: 154 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctaaaattgctgagtttacagcaacttttgagaaacaagcacttgccttcaacataata 679
Query: 214 tcccaa 219
||||||
Sbjct: 680 tcccaa 685
>gnl|LJGI|AV773927
Length = 219
Score = 109 bits (55), Expect = 2e-23
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 565 aatgatgaagctgagaatggagacacaggcacacaggatggttggcg-tgaagttggtga 623
|||||||||||||||||||||||| | ||||| | || ||||||||| ||||||||||||
Sbjct: 219 aatgatgaagctgagaatggagaccccggcaccccggctggttggcggtgaagttggtga 160
Query: 624 atttgatttgaatgctaggtgat 646
|||||||||||||||||||||||
Sbjct: 159 atttgatttgaatgctaggtgat 137
>gnl|LJGI|DC595479 homologue to UniRef100_A7PB20 Cluster: Chromosome chr16
scaffold_10, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr16 scaffold_10, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 292
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 34 agattattgccatatcatgttgtggcagactatgaagc 71
||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agattattgccatatcatgttgtggcagactatgaagc 292