Miyakogusa Predicted Gene

Lj0g3v0150479.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0150479.2 tr|B9HKE2|B9HKE2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766427 PE=4 SV=1,46.67,2e-18,Ring
finger,Zinc finger, RING-type; zf-C3HC4,Zinc finger, C3HC4 RING-type;
coiled-coil,NULL; no desc,CUFF.9242.2
         (1407 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63288 weakly similar to UniRef100_A7QVP5 Cluster: Chr...   434   e-121
gnl|LJGI|TC62720 similar to UniRef100_A7QVP5 Cluster: Chromosome...   161   1e-38
gnl|LJGI|DC594315 similar to UniRef100_A7PUM6 Cluster: Chromosom...   101   1e-20

>gnl|LJGI|TC63288 weakly similar to UniRef100_A7QVP5 Cluster: Chromosome chr14
           scaffold_190, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_190, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (63%)
          Length = 1636

 Score =  434 bits (219), Expect = e-121
 Identities = 357/403 (88%)
 Strand = Plus / Plus

                                                                       
Query: 56  agaggcagaagctggaagcatgcatgaaatgccctctttgccgtaaccttttcaaagaag 115
           ||||||| | ||| |||||||||||||||||||||||||||  |||  |||||| |||||
Sbjct: 221 agaggcaaacgcttgaagcatgcatgaaatgccctctttgctataagattttcagagaag 280

                                                                       
Query: 116 ctaccaccatttctctctgcctccacaccttttgcaggaagtgcatatatgagaaacttt 175
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctaccaccatttctctctgccttcacaccttttgcaggaagtgcatatatgagaaacttt 340

                                                                       
Query: 176 cagatgaggagatggaattctgtccagtttgcaatattgatctggggtgcctaccaatgg 235
           |||||||||||||||| | ||||||||| ||||||||||||||||||||| |  || |||
Sbjct: 341 cagatgaggagatggattgctgtccagtatgcaatattgatctggggtgcatggcagtgg 400

                                                                       
Query: 236 aaaagctcaggcctgatcacaatttgcaagatattagggccatagtattcccttttgaac 295
           |||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| | |
Sbjct: 401 aaaagctcaggcctgaccacaatttgcaagatatgagggccaaattattcccttttaagc 460

                                                                       
Query: 296 gaagaaagatcgaagtccaagaagttgttccttcaatatcctcaccagggaaaaagaagg 355
            || ||||||   |   |||||||||||||||||  ||||| |||||| ||||| |||||
Sbjct: 461 aaaaaaagataagacctcaagaagttgttccttctgtatccccaccagcgaaaaggaagg 520

                                                                       
Query: 356 aaagatcactttcatcatttgtggttagtgctcccaaagtttcaacagacactggcctta 415
           ||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 521 aaagatcactttcatcactggtggttagtgctcccaaagtttcgacaaacactggcttta 580

                                                      
Query: 416 caggaaagagcattaaaactggtacaaggaaggctgctgcttt 458
           |||||||||| | ||||||  ||||||| ||||||||| ||||
Sbjct: 581 caggaaagagaactaaaaccagtacaagaaaggctgctacttt 623


>gnl|LJGI|TC62720 similar to UniRef100_A7QVP5 Cluster: Chromosome chr14 scaffold_190,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_190, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (40%)
          Length = 1018

 Score =  161 bits (81), Expect = 1e-38
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                       
Query: 74  catgcatgaaatgccctctttgccgtaaccttttcaaagaagctaccaccatttctctct 133
           ||||||||| |||||||||||||||||| || ||||| || ||||||||||| |||||||
Sbjct: 316 catgcatgacatgccctctttgccgtaaactcttcaaggatgctaccaccatctctctct 375

                                                                       
Query: 134 gcctccacaccttttgcaggaagtgcatatatgagaaactttcagatgaggagatggaat 193
           |||| || |||||||||||||| ||||| |||||||| || ||||||||||||   || |
Sbjct: 376 gccttcataccttttgcaggaaatgcatttatgagaagctctcagatgaggagtctgatt 435

                                                                       
Query: 194 tctgtccagtttgcaatattgatctggggtgcctaccaatggaaaagctcaggcctgatc 253
            ||||||||| |||||||||||||| || ||  | ||| ||||||| |||||| | || |
Sbjct: 436 gctgtccagtgtgcaatattgatctaggatgtgttccagtggaaaaactcagggcagacc 495

                        
Query: 254 acaatttgcaaga 266
           |||||||||||||
Sbjct: 496 acaatttgcaaga 508


>gnl|LJGI|DC594315 similar to UniRef100_A7PUM6 Cluster: Chromosome chr7 scaffold_31,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_31, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (18%)
          Length = 589

 Score =  101 bits (51), Expect = 1e-20
 Identities = 111/131 (84%)
 Strand = Plus / Plus

                                                                       
Query: 139 cacaccttttgcaggaagtgcatatatgagaaactttcagatgaggagatggaattctgt 198
           ||||| ||||||||||||||||| ||||| |||||||||||||||||  |||||| ||||
Sbjct: 458 cacacgttttgcaggaagtgcatttatgataaactttcagatgaggaattggaatgctgt 517

                                                                       
Query: 199 ccagtttgcaatattgatctggggtgcctaccaatggaaaagctcaggcctgatcacaat 258
           ||| ||||||| |||||| |||| ||  | ||| | || || || ||||| || ||||||
Sbjct: 518 ccaatttgcaacattgatttgggctgtgttccacttgagaaactgaggccagaccacaat 577

                      
Query: 259 ttgcaagatat 269
           |||||||||||
Sbjct: 578 ttgcaagatat 588