Miyakogusa Predicted Gene
- Lj0g3v0149989.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0149989.2 tr|G7KER5|G7KER5_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_5g011000 PE=3
SV=1,72.8,0,seg,NULL; DNA-DIRECTED RNA POLYMERASE,NULL; beta and
beta-prime subunits of DNA dependent RNA-polyme,CUFF.9202.2
(3147 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71447 weakly similar to UniRef100_Q1L5X6 Cluster: DNA... 1302 0.0
gnl|LJGI|AW720336 weakly similar to UniRef100_A5BZZ3 Cluster: DN... 1001 0.0
gnl|LJGI|TC79448 similar to UniRef100_A5BZZ3 Cluster: DNA-direct... 999 0.0
>gnl|LJGI|TC71447 weakly similar to UniRef100_Q1L5X6 Cluster: DNA-directed RNA
polymerase; n=1; Solanum lycopersicum|Rep: DNA-directed
RNA polymerase - Solanum lycopersicum (Tomato)
(Lycopersicon esculentum), partial (7%)
Length = 1105
Score = 1302 bits (657), Expect = 0.0
Identities = 660/661 (99%)
Strand = Plus / Plus
Query: 2487 cttggatgatcttcagggatgcctagatgcattggcttggggaaagtgtatgtccatggg 2546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggatgatcttcagggatgcctagatgcattggcttggggaaagtgtatgtccatggg 60
Query: 2547 aacaagtggacagtttgatatcatgcactcagagaaggtagaagagtttcctgagtctgc 2606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaagtggacagtttgatatcatgcactcagagaaggtagaagagtttcctgagtctgc 120
Query: 2607 agatgtgtacagcctgctaatagccaactttgaccagctgaatgataaggttgatatccc 2666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatgtgtacagcctgctaatagccaactttgaccagctgaatgataaggttgatatccc 180
Query: 2667 tcattatcacaaccgctcatcgaacaaatgtgattctgagtttagccgtaaaaatggcgg 2726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcattatcacaaccgctcatcgaacaaatgtgattctgagtttagccgtaaaaatggcgg 240
Query: 2727 ttatgccctgaaagagtataaacagtcgaaaagctttataagaaattttgtgactgtaaa 2786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttatgccctgaaagagtataaacagtcgaaaagctttataagaaattttgtgactgtaaa 300
Query: 2787 tgatattcagaaactggcttttgaatcaaggtccatattgagcaggtattcaattgatca 2846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatattcagaaactggcttttgaatcaaggtccatattgagcaggtattcaattgatca 360
Query: 2847 ggtaataagcgatcatgataagatcacaatgctgcgggttttgcattttcatcctcgtaa 2906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtaataagcgatcatgataagatcacaatgctgcgggttttgcattttcatcctcgtaa 420
Query: 2907 aaatgagaagcttggctgtggcccagcggacataaaggttggatggcatcctgtacataa 2966
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatgagaagcttggctgtggaccagcggacataaaggttggatggcatcctgtacataa 480
Query: 2967 ggatagccgctgcttccatataatacgaagtgatgaaagtgttgaagatttttcataccg 3026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggatagccgctgcttccatataatacgaagtgatgaaagtgttgaagatttttcataccg 540
Query: 3027 caaatgcattcttcgtgctcttgagattgttgatccgggcaagttcaggatccagaagaa 3086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaatgcattcttcgtgctcttgagattgttgatccgggcaagttcaggatccagaagaa 600
Query: 3087 aaagtggctgggacaagatgacattgttgaactaaaaaagagtcagaagacaaatcatta 3146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaagtggctgggacaagatgacattgttgaactaaaaaagagtcagaagacaaatcatta 660
Query: 3147 g 3147
|
Sbjct: 661 g 661
>gnl|LJGI|AW720336 weakly similar to UniRef100_A5BZZ3 Cluster: DNA-directed RNA
polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (8%)
Length = 534
Score = 1001 bits (505), Expect = 0.0
Identities = 526/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 1500 tctggagtgtggttccaggnnnnnnngtggtgaccagacagtgtctttatttttgtcgga 1559
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 tctggagtgtggttccaggaaaaaaagtggtgaccagacagtgtctttatttttgtcgga 60
Query: 1560 caaacttggtaaacagaggtac-gggtttgagtatgcagccctagaagtgaagaattatt 1618
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaacttggtaaacagaggtaccgggtttgagtatgcagccctagaagtgaagaattatt 120
Query: 1619 tggaaagagtgatgttctcagacattgtttctactgtcatgataatgttcactccacagt 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaaagagtgatgttctcagacattgtttctactgtcatgataatgttcactccacagt 180
Query: 1679 cttccagcctggaaattttcaatccttgggtttgccattttcatttagacaaggaaattg 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttccagcctggaaattttcaatccttgggtttgccattttcatttagacaaggaaattg 240
Query: 1739 tagcaagaagaaagttaacagtgcattctgtcattgagtctctttaccggcgatatgaat 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagcaagaagaaagttaacagtgcattctgtcattgagtctctttaccggcgatatgaat 300
Query: 1799 ccctaactaaggaatcaaaagtcacttttcccaatttgaaaatatcaagcaacaggaagt 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctaactaaggaatcaaaagtcacttttcccaatttgaaaatatcaagcaacaggaagt 360
Query: 1859 gctctaaggaaggtggatatgcttctttaaataaagaaaaggaggatgtagattgcatct 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gctctaaggaaggtggatatgcttctttaaataaagaaaaggaggatgtagattgcatct 420
Query: 1919 ctgtcacaattgttgaaagctctaggagttctgcaaaactggaggctgttcgggacttga 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgtcacaattgttgaaagctctaggagttctgcaaaactggaggctgttcgggacttga 480
Query: 1979 tgatacctttccttcttggaacagttataaaaggatttctggagatcaagaagg 2032
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgatacctttccttcttggaacagttataaaaggatttctggagatcaagaagg 534
>gnl|LJGI|TC79448 similar to UniRef100_A5BZZ3 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (21%)
Length = 1165
Score = 999 bits (504), Expect = 0.0
Identities = 504/504 (100%)
Strand = Plus / Plus
Query: 1 atgatttctctctcagttagggtccttcctatatcttctgtggtatcaattaaccctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atgatttctctctcagttagggtccttcctatatcttctgtggtatcaattaaccctctt 721
Query: 61 tgttgttcgccactgcgtggggattttgatggtgattgcctacatggatatattccacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgttgttcgccactgcgtggggattttgatggtgattgcctacatggatatattccacaa 781
Query: 121 tcagttgctgcaagagttgaacttaatgaactggttgctttagataggcaattgattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tcagttgctgcaagagttgaacttaatgaactggttgctttagataggcaattgattaat 841
Query: 181 gggcaaagtggtcggaatctgctttcactttctcaggatagtttaactgctgcatatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gggcaaagtggtcggaatctgctttcactttctcaggatagtttaactgctgcatatatg 901
Query: 241 ttgatggaagatggggtccttttgaatctttatgagattcaacagctgcaaatgttgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ttgatggaagatggggtccttttgaatctttatgagattcaacagctgcaaatgttgtgc 961
Query: 301 gataaaaagttgacaccaccaccgtcaattataaaagctccttcaagaaataactcattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gataaaaagttgacaccaccaccgtcaattataaaagctccttcaagaaataactcattg 1021
Query: 361 tggagtggaaagcaattattcagcatgctcttgccttctaattttgactactcttttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tggagtggaaagcaattattcagcatgctcttgccttctaattttgactactcttttcct 1081
Query: 421 ccaaatggcgtttctgttagtgatggggaacttacatcttcttttgagtcttctggatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 ccaaatggcgtttctgttagtgatggggaacttacatcttcttttgagtcttctggatgg 1141
Query: 481 ttacgtgattccgagtgcaacatt 504
||||||||||||||||||||||||
Sbjct: 1142 ttacgtgattccgagtgcaacatt 1165