Miyakogusa Predicted Gene

Lj0g3v0146689.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0146689.1 Non Chatacterized Hit- tr|F6HPD4|F6HPD4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.93,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PPR:
pentatricopeptide repeat domain,Pentatricopept,CUFF.8946.1
         (306 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP038410 weakly similar to UniRef100_A7QEG3 Cluster: Ch...   513   e-145

>gnl|LJGI|BP038410 weakly similar to UniRef100_A7QEG3 Cluster: Chromosome chr1
           scaffold_84, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_84, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 468

 Score =  513 bits (259), Expect = e-145
 Identities = 289/299 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgttggagtgggcttagagctagtacttccaccgtcttgatcctttttccagcagcc 60
           ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct: 362 atgtgttggagtgggcttatagctagtgcttccaccgtcttgatccttttgccagcagcc 303

                                                                       
Query: 61  ggtgatacatggaactttgttgttgggaagtccctccatggttactgtatccaaattgga 120
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 ggtgatacagggaactttgttgttgggaagtccctccatggttactatatccaaattgga 243

                                                                       
Query: 121 cttagttctcatttaaatgtccttactgcattgatagatatgtatgcgaaaataggactt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 242 tttagttctcatttaaatgtccttactgcattgatagatatgtatgcgaaaacaggactt 183

                                                                       
Query: 181 gtgcactgggggcgtaagatttttgatggtcttgttgataaggatgttgtcttatggaat 240
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 182 gtgcattgggggcgtaagatttttgatagtcttgttgataaggatgttgtcttatggaat 123

                                                                      
Query: 241 tgtttaataggaaattatgcaaggaatggtctggtaggagaagcagtgtatttattaca 299
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 122 tgtttaataggaaattatgcaaggaatggtctggtaggagaagcattgtatttattaca 64