Miyakogusa Predicted Gene
- Lj0g3v0146199.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0146199.1 Non Chatacterized Hit- tr|I1LKG9|I1LKG9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.1,0.041,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; NUCLEAR
PORE GLYCOPROTEIN P62-RELATED,Nucleoporin NSP1/N,CUFF.8917.1
(1860 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68810 similar to UniRef100_A7PKF6 Cluster: Chromosome... 975 0.0
gnl|LJGI|TC58345 similar to UniRef100_Q9SBM1 Cluster: Hydroxypro... 858 0.0
gnl|LJGI|BW594435 homologue to gb|AF036494.1|AF036494 Eucryphia ... 410 e-113
>gnl|LJGI|TC68810 similar to UniRef100_A7PKF6 Cluster: Chromosome chr15 scaffold_19,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_19, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 880
Score = 975 bits (492), Expect = 0.0
Identities = 501/504 (99%)
Strand = Plus / Plus
Query: 1357 cacaggattttgcggaatcgtgatgttctgttgaggcttgagattgccgtggcaaaagta 1416
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cacaggattttgcggaatcgtgatgttctgttgaggcttgagattgaagtggcaaaagta 60
Query: 1417 gttgagacacagtcaaatttggagcggcaattggagttgatagagactcatcagcaggag 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttgagacacagtcaaatttggagcggcaattggagttgatagagactcatcagcaggag 120
Query: 1477 gctgataaggctttacaaagcatggaggaagaagctgagcgtatttacaaggatgagcga 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctgataaggctttacaaagcatggaggaagaagctgagcgtatttacaaggatgagcga 180
Query: 1537 ggattacttcttgatgatgaagctgcatctacaagagatgcaatgtatgaacagtctgaa 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggattacttcttgatgatgaagctgcatctacaagagatgcaatgtatgaacagtctgaa 240
Query: 1597 ttgatagaaagggaactagagcacatgacagaacagataaaatcaattatccaatccctt 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgatagaaagggaactagagcacatgacagaacagataaaatcaattatccaatccctt 300
Query: 1657 aactcaaaccagggcggagaactcgatgcagctgatggaatgaatccattagatgctgta 1716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 aactcaaaccagggcggagaactcgatgcagctgatggaatgagtccattagatgctgta 360
Query: 1717 gttcgaattctaaataatcaactaacttctctgatgtggattgatgaaaaggctgaagaa 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcgaattctaaataatcaactaacttctctgatgtggattgatgaaaaggctgaagaa 420
Query: 1777 ttttcttcccgcattcagaagctatctaaccaaggttctgcttcagatcgtgaactgacg 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttcttcccgcattcagaagctatctaaccaaggttctgcttcagatcgtgaactgacg 480
Query: 1837 ggtccaggaatgtggatgtcctga 1860
||||||||||||||||||||||||
Sbjct: 481 ggtccaggaatgtggatgtcctga 504
>gnl|LJGI|TC58345 similar to UniRef100_Q9SBM1 Cluster: Hydroxyproline-rich
glycoprotein DZ-HRGP precursor; n=1; Volvox carteri f.
nagariensis|Rep: Hydroxyproline-rich glycoprotein
DZ-HRGP precursor - Volvox carteri f. nagariensis,
partial (11%)
Length = 793
Score = 858 bits (433), Expect = 0.0
Identities = 433/433 (100%)
Strand = Plus / Plus
Query: 241 acctcctcctccgcgtccgccgctccgccgagtaccgctccctcaatcttcggtgccgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctcctcctccgcgtccgccgctccgccgagtaccgctccctcaatcttcggtgccgcc 420
Query: 301 gccgccacctcagcttcaacgactccactgtttggaggagcctcctccgcttcaacggcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccgccacctcagcttcaacgactccactgtttggaggagcctcctccgcttcaacggcg 480
Query: 361 ccgctgtttgggggaacgtcttcttcgacgacactctttggcggaacaccttctgcaacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccgctgtttgggggaacgtcttcttcgacgacactctttggcggaacaccttctgcaacg 540
Query: 421 acgccgtttgcgtcgtttggggtttcgtcatcttcttcttcttcagctgcaactaccacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acgccgtttgcgtcgtttggggtttcgtcatcttcttcttcttcagctgcaactaccacc 600
Query: 481 acatctttgttctccaacgcatttgccactggtgcttctccgttaggttcttcttcttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acatctttgttctccaacgcatttgccactggtgcttctccgttaggttcttcttcttct 660
Query: 541 gctgcagctacaacttctttgttctcaactgcatttggtaccggtgctgcctcttcttcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gctgcagctacaacttctttgttctcaactgcatttggtaccggtgctgcctcttcttcg 720
Query: 601 agctcaacgacgtcgttttcagcgtttggaaagccgtctactccggctactagtgtgact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agctcaacgacgtcgttttcagcgtttggaaagccgtctactccggctactagtgtgact 780
Query: 661 gcaacgacgtcgt 673
|||||||||||||
Sbjct: 781 gcaacgacgtcgt 793
Score = 109 bits (55), Expect = 6e-23
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 66 ttcctctccattttcactctcaaacccttcctctgcttccccattctcatttgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcctctccattttcactctcaaacccttcctctgcttccccattctcatttgga 240
Score = 73.8 bits (37), Expect = 3e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 atgtcgggtttcgcattcggatcctcttcttcttcta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgtcgggtttcgcattcggatcctcttcttcttcta 160
>gnl|LJGI|BW594435 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (8%)
Length = 487
Score = 410 bits (207), Expect = e-113
Identities = 210/211 (99%)
Strand = Plus / Plus
Query: 889 agtggtgtctccagcctgtcatcttctgggcctgcatttggtgccccagctgcgtctact 948
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtggtgtctccatcctgtcatcttctgggcctgcatttggtgccccagctgcgtctact 336
Query: 949 gcccctacaactgttgcctcatctgccgcgccgacagctccagctagtgctccttcctct 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcccctacaactgttgcctcatctgccgcgccgacagctccagctagtgctccttcctct 396
Query: 1009 atttccacagcttccttcgggtctgggttttcctttgcgacaaaggcttcttcaacacct 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atttccacagcttccttcgggtctgggttttcctttgcgacaaaggcttcttcaacacct 456
Query: 1069 gcagtttccactgttactacttctgcatttg 1099
|||||||||||||||||||||||||||||||
Sbjct: 457 gcagtttccactgttactacttctgcatttg 487