Miyakogusa Predicted Gene

Lj0g3v0142719.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0142719.1 Non Chatacterized Hit- tr|K4DFU4|K4DFU4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,35.46,5e-19,
,18829_g.1
         (478 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS358394 weakly similar to UniRef100_A7PZQ8 Cluster: Ch...    58   5e-08
gnl|LJGI|FS361599 weakly similar to UniRef100_O82343 Cluster: Ex...    54   8e-07

>gnl|LJGI|FS358394 weakly similar to UniRef100_A7PZQ8 Cluster: Chromosome chr15
           scaffold_40, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (40%)
          Length = 712

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 244 ggaagcattgatgcggactataaatttgctgtaatgttgaggccaacaaagaa 296
           ||||||||||||| ||||||| |||||| || || ||||| ||||||||||||
Sbjct: 254 ggaagcattgatgtggactatgaatttggtgcaaggttgaagccaacaaagaa 202


>gnl|LJGI|FS361599 weakly similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
           Arabidopsis thaliana|Rep: Expressed protein -
           Arabidopsis thaliana (Mouse-ear cress), partial (31%)
          Length = 752

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 369 ggttccgtggacttcgttcattgctgaggacagtccattctttattgaaggcattctcca 428
           |||||| |||||||| |||||||||||||| ||||  ||||| ||| | | | |||||||
Sbjct: 158 ggttccatggacttcattcattgctgaggatagtcttttcttcattaacgacgttctcca 99

                          
Query: 429 ccttagggccaagct 443
           |||||| || |||||
Sbjct: 98  ccttagagctaagct 84