Miyakogusa Predicted Gene
- Lj0g3v0139469.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0139469.1 tr|D7MGB0|D7MGB0_ARALL Zinc finger (B-box type)
family protein OS=Arabidopsis lyrata subsp. lyrata
G,41.54,2e-19,zf-B_box,Zinc finger, B-box; B-Box-type zinc finger,Zinc
finger, B-box; ZF_BBOX,Zinc finger, B-box; ,CUFF.8486.1
(537 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62940 similar to UniRef100_A7QE16 Cluster: Chromosome... 1049 0.0
gnl|LJGI|TC58011 similar to UniRef100_A7QE16 Cluster: Chromosome... 398 e-110
>gnl|LJGI|TC62940 similar to UniRef100_A7QE16 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 857
Score = 1049 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Plus
Query: 1 atgcgaactctttgtgacgcttgtgagagcgccgctgctattgttttttgcgctgcggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atgcgaactctttgtgacgcttgtgagagcgccgctgctattgttttttgcgctgcggat 217
Query: 61 gaggctgcgctatgcagtgcctgtgatgagaaggttcacatgtgtaataagctagctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaggctgcgctatgcagtgcctgtgatgagaaggttcacatgtgtaataagctagctagc 277
Query: 121 cggcatgtaagggttagtcttgcaagtccaagtgatgttcctcgctgtgacatttgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cggcatgtaagggttagtcttgcaagtccaagtgatgttcctcgctgtgacatttgtgag 337
Query: 181 aatgcacctgccttcttctattgcgagacagatggaacttccctttgtttgcagtgtgat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aacgcacctgccttcttctattgcgagacagatggaacttccctttgtttgcagtgtgat 397
Query: 241 atcattgttcatgttggaggtaaaagaacacatggaagataccttctttttaggcaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atcattgttcatgttggaggtaaaagaacacatggaagataccttctttttaggcaaaga 457
Query: 301 attgagtttccaggagataaacctggtcatgcagaaagcccagtttcacatcctttgaat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 458 attgagtttccaggagataaacctggtcatgcagaaagcccagtttcccatcctttgaat 517
Query: 361 ccaggtgggactaagagaggagcaaatccactaccccaaatgaaattgggagaaatacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccaggtgggactaagagaggagcaaatccactaccccaaatgaaattgggagaaatacaa 577
Query: 421 caaaatcacaggatggttccatcatcagaagctgatgcaatgagggaaaccaaaatgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaaatcacaggatggttccatcatcagaagctgatgcaatgagggaaaccaaaatgatt 637
Query: 481 gacttgaacatgaagcctcacaaaattgacgaacaaacatcaaataatcagccataa 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gacttgaacatgaagcctcacaaaattgacgaacaaacatcaaataatcagccataa 694
>gnl|LJGI|TC58011 similar to UniRef100_A7QE16 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 852
Score = 398 bits (201), Expect = e-110
Identities = 336/381 (88%)
Strand = Plus / Plus
Query: 1 atgcgaactctttgtgacgcttgtgagagcgccgctgctattgttttttgcgctgcggat 60
|||||||||||||||||||||||||| |||||||| |||||||| || ||||| || |||
Sbjct: 79 atgcgaactctttgtgacgcttgtgaaagcgccgccgctattgtcttctgcgccgccgat 138
Query: 61 gaggctgcgctatgcagtgcctgtgatgagaaggttcacatgtgtaataagctagctagc 120
|| ||||| || ||| ||||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 139 gaagctgcactctgccgtgcctgcgatgagaaggttcatttgtgcaataagctagctagt 198
Query: 121 cggcatgtaagggttagtcttgcaagtccaagtgatgttcctcgctgtgacatttgtgag 180
||||||||||||||| ||||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 199 cggcatgtaagggttggtcttgctagtccaagtgatgtgccacgctgtgacatatgcgag 258
Query: 181 aatgcacctgccttcttctattgcgagacagatggaacttccctttgtttgcagtgtgat 240
||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 259 aatgcacctgctttcttctactgcgagacggatggaagttccctttgtttgcagtgtgat 318
Query: 241 atcattgttcatgttggaggtaaaagaacacatggaagataccttctttttaggcaaaga 300
|| || ||||||||||||||||||||||| ||| ||||||| ||||| ||| ||||||||
Sbjct: 319 atgatagttcatgttggaggtaaaagaactcatagaagatatcttctgtttcggcaaaga 378
Query: 301 attgagtttccaggagataaacctggtcatgcagaaagcccagtttcacatcctttgaat 360
|||||||||||||| |||||| || | |||||||||| ||||| ||||| ||| || |
Sbjct: 379 attgagtttccaggtgataaatctagccatgcagaaaacccagcttcactacctctggaa 438
Query: 361 ccaggtgggactaagagagga 381
||||||| | |||||||||||
Sbjct: 439 ccaggtgaggctaagagagga 459
Score = 52.0 bits (26), Expect = 4e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 473 aaatgattgacttgaacatgaagcctcacaaaattgacgaacaaacatcaaataatca 530
||||| |||| ||||||||||| ||| ||| ||| |||||||| |||||||||||||
Sbjct: 569 aaatgtttgatttgaacatgaaccctaacagaatacacgaacaagcatcaaataatca 626