Miyakogusa Predicted Gene
- Lj0g3v0133829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0133829.1 tr|G7JPX2|G7JPX2_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_4g107820 PE=4
SV=1,47.25,0.000000000002,FBA_1,F-box associated domain, type 1;
F_box_assoc_1: F-box protein interaction domain,F-box
associa,CUFF.8180.1
(387 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80229 similar to UniRef100_A9XI08 Cluster: Class S F-... 278 2e-74
gnl|LJGI|TC65345 121 3e-27
gnl|LJGI|TC60244 weakly similar to UniRef100_Q2HS67 Cluster: Cyc... 76 2e-13
>gnl|LJGI|TC80229 similar to UniRef100_A9XI08 Cluster: Class S F-box protein; n=1;
Nicotiana alata|Rep: Class S F-box protein - Nicotiana
alata (Winged tobacco) (Persian tobacco), partial (5%)
Length = 692
Score = 278 bits (140), Expect = 2e-74
Identities = 224/252 (88%)
Strand = Plus / Plus
Query: 109 gataaattggtgattatttcttttgacgtggaaaaggagactcatggtgaaatgttgcta 168
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 gataaattggtgattatttcttttgacgtggaaaaagagactcatggtgaagtgttgcta 60
Query: 169 ccttctgagctggagggtgaaatttggagtcttgacctgcatgtcttcaataagtatctt 228
||| ||||||| ||||||| | ||||||||||| ||||| ||||| ||||||| |||||
Sbjct: 61 cctcctgagctagagggtggattttggagtcttcacctgtttgtctccaataagcatctt 120
Query: 229 tatgtgtcgcaatattctcacaaaactcgtttagttctttggttgatgaaagagtatgga 288
|||||| ||| |||| |||| ||| |||| |||||||||||||||||||| ||||||
Sbjct: 121 tatgtggggcaccgttcttacaacacttgttttgttctttggttgatgaaagactatgga 180
Query: 289 gttcaggaatcttggactaaagtgatgacgatccctctcaagtctagataccgtatttgt 348
|||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||||||||
Sbjct: 181 gttcaggagtcttggactaaagtaatgacgatccctctcaactctgaatactgtatttgt 240
Query: 349 agatgcgatgct 360
|||||| |||||
Sbjct: 241 agatgcaatgct 252
>gnl|LJGI|TC65345
Length = 776
Score = 121 bits (61), Expect = 3e-27
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 96 aggtcatggttctgataaattggtgattatttcttttgacgtggaaaaggagactcatgg 155
|||| ||||||||| ||||| | |||||| ||| ||||||||||||| |||||||||||
Sbjct: 614 aggtgatggttctggtaaatggatgattagttcgcttgacgtggaaaatgagactcatgg 673
Query: 156 tgaaatgttgctaccttctgagctggagggtgaaatttggagtcttgacctgcatgtctt 215
| || ||||||||||| || |||||||| |||| || || || |||||||| |||||
Sbjct: 674 taaattgttgctacctcctatgctggaggatgaagttgggcgtattgacctggctgtctc 733
Query: 216 caataagtatctttatgtgtcgcaatattctcacaaaactc 256
||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 734 caatagctatctttatgtgtggcaattttctcacaaaactc 774
>gnl|LJGI|TC60244 weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (12%)
Length = 1433
Score = 75.8 bits (38), Expect = 2e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 268 tggttgatgaaagagtatggagttcaggaatcttggactaaagtgatgacgatccctc 325
|||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||
Sbjct: 861 tggttgatgaaagaatatggagttcaggagtcttggactaaatttatgacgatgcctc 918