Miyakogusa Predicted Gene

Lj0g3v0132739.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0132739.1 tr|A9SCD4|A9SCD4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164112,24.04,8e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; coiled-coil,NULL,CUFF.8094.1
         (1623 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73874 similar to UniRef100_A7NZU9 Cluster: Chromosome...   319   3e-86
gnl|LJGI|FS323931 similar to UniRef100_A7NZU9 Cluster: Chromosom...    88   2e-16

>gnl|LJGI|TC73874 similar to UniRef100_A7NZU9 Cluster: Chromosome chr6 scaffold_3,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_3, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (36%)
          Length = 782

 Score =  319 bits (161), Expect = 3e-86
 Identities = 362/429 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1183 aacttgcttctccaaccatataagctctctctaaattccaaaaattcaaaggcagtgctg 1242
            ||||||||||| ||||| || |||||||| ||  |||||||| | ||||||||||| |||
Sbjct: 54   aacttgcttcttcaaccttacaagctctcccttgattccaaatactcaaaggcagttctg 113

                                                                        
Query: 1243 taccattttgaagctttcataaaccagtgtttcttccaagactttgagaactgtgtgttc 1302
            |||||||||||||||||||||||||| | | ||||||||||||| ||||| |||||||||
Sbjct: 114  taccattttgaagctttcataaaccaatctctcttccaagacttcgagaattgtgtgttc 173

                                                                        
Query: 1303 caaaagaatggttgtgcaaaactcctagacccacgtgtttatcgcgaatcacagttctct 1362
            ||||||||||| || |||||| || |||||||  |     ||||| || |||| ||||| 
Sbjct: 174  caaaagaatggctgcgcaaaattcttagaccctagacaagatcgccaagcacaattctcc 233

                                                                        
Query: 1363 tcattcgttgcgcttcggaagttgagctggaacgaggtgctgagaaagggaacaaagtat 1422
            |||||||| |||||  | ||  |||||||||| ||||||||||||||||| || || |||
Sbjct: 234  tcattcgtcgcgctaagaaacctgagctggaatgaggtgctgagaaagggtactaaatat 293

                                                                        
Query: 1423 tacagtgaagggttcagcaagttctgtgaccagaaaatgagttgtgtgaacactagtctg 1482
            |||||||||| |||||||||||||||||||||||||||||||||  | | ||||   |||
Sbjct: 294  tacagtgaagagttcagcaagttctgtgaccagaaaatgagttgcatcatcactgcactg 353

                                                                        
Query: 1483 aattggactaggccttggccagaacagcttcttcaagctttctttgtggcggcgaaatgc 1542
            ||||||   ||||||||||  || ||||| |||||||||||||||||||| || ||||||
Sbjct: 354  aattggttgaggccttggcatgagcagctacttcaagctttctttgtggcagcaaaatgc 413

                                                                        
Query: 1543 atgtggctgctgcattttcttgccttttcattcaaccctccattgggggtttttagggtt 1602
            || ||| |||||||| |||| || ||||| |||||||| ||||||||  |||| ||||| 
Sbjct: 414  atatggttgctgcatcttctggcattttctttcaacccgccattgggaattttgagggtg 473

                     
Query: 1603 gaagagaat 1611
            |||||||||
Sbjct: 474  gaagagaat 482


>gnl|LJGI|FS323931 similar to UniRef100_A7NZU9 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (15%)
          Length = 534

 Score = 87.7 bits (44), Expect = 2e-16
 Identities = 144/176 (81%), Gaps = 6/176 (3%)
 Strand = Plus / Plus

                                                                       
Query: 94  gaaattcaaaccgccatagctaaagcagtggaattaagagctcttcatgctgctttaatg 153
           ||||| ||| |||||||||| |||||||||||  ||||||| |||||||||||  ||| |
Sbjct: 88  gaaatccaatccgccatagccaaagcagtggagctaagagcccttcatgctgcactaacg 147

                                                                       
Query: 154 cgaggaaatagcccagccagtgctaaa---ttcccatctccttcccctgcatcttgccct 210
           | ||||| |||||||   | ||||| |   ||| | || ||||||||||| ||  || ||
Sbjct: 148 caaggaactagccca---aatgctagaagattctcttccccttcccctgcttcacgctct 204

                                                                   
Query: 211 gtttctcagttctctgcccaagattaccctgttttcacacctagctatgaagatga 266
           | ||||||||| || || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 205 gcttctcagttttcagctcaagattaccctgttttcacaccaagctatgaggatga 260



 Score = 77.8 bits (39), Expect = 2e-13
 Identities = 95/113 (84%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                       
Query: 439 tgtccagctgatgacagcaaatcagtaacagggtcttgtgcaaatcacatcactgttctt 498
           ||||| ||||||||   ||||||||| || || || |||| |||||||||||||||||||
Sbjct: 421 tgtcctgctgatgatgccaaatcagtgactggttcatgtggaaatcacatcactgttctt 480

                                                                
Query: 499 caaacatcaccttgtaatgactactacaaatctagtagaagaaacagtttgga 551
           |||||||| ||   |||||| |||| ||| ||||| || ||||||||||||||
Sbjct: 481 caaacatcccc---taatgattacttcaagtctaggaggagaaacagtttgga 530