Miyakogusa Predicted Gene

Lj0g3v0132489.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0132489.1 tr|A9RVJ9|A9RVJ9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161310,29.95,7e-17,RRM_1,RNA recognition motif domain;
RRM_5,NULL; SPOC,Spen paralogue and orthologue SPOC,
C-terminal;,CUFF.8071.1
         (2211 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70858 similar to UniRef100_Q6ID24 Cluster: At4g12630;...   872   0.0  

>gnl|LJGI|TC70858 similar to UniRef100_Q6ID24 Cluster: At4g12630; n=2; Arabidopsis
           thaliana|Rep: At4g12630 - Arabidopsis thaliana
           (Mouse-ear cress), partial (65%)
          Length = 568

 Score =  872 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcagctcgaggtggaaggggccgggttcggagggattacccttctagatatgaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 121 atgtcagctcgaggtggaaggggccgggttcggagggattacccttctaaatatgaagag 180

                                                                       
Query: 61  agtaaagggaataatggggttactgggcgaggcggcggcggtagcaatagcaatagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agtaaagggaataatggggttactgggcgaggcggcggcggtagcaatagcaatagcaat 240

                                                                       
Query: 121 agcagcattaaccaccctccttccaggcacctttgggttgggaatctgtctcatgatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agcagcattaaccaccctccttccaggcacctttgggttgggaatctgtctcatgatatt 300

                                                                       
Query: 181 gtggaggatgaattggctatccctttcttacggtttgggccgctggatagtgtcgccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtggaggatgaattggctatccctttcttacggtttgggccgctggatagtgtcgccttc 360

                                                                       
Query: 241 cagcctggtcgaagctttgcgtttatcaacttcaagagggatgaagatgctattgatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagcctggtcgaagctttgcgtttatcaacttcaagagggatgaagatgctattgatgcc 420

                                                                       
Query: 301 atgagatcactgcaaggttttcctcttgctggcaactcgctaagaatcgagtatgctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgagatcactgcaaggttttcctcttgctggcaactcgctaagaatcgagtatgctaag 480

                                                                       
Query: 361 gcggataagccaccgataacatcacgtgatgaagattactcacgggatgagcggagatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcggataagccaccgataacatcacgtgatgaagattactcacgggatgagcggagatca 540

                                       
Query: 421 gcattaaggggatcatctcctgtctcca 448
           ||||||||||||||||||||||||||||
Sbjct: 541 gcattaaggggatcatctcctgtctcca 568