Miyakogusa Predicted Gene

Lj0g3v0132309.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0132309.1 tr|Q108W5|Q108W5_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os10g42196 PE=4 SV=1,39.42,3e-19,
,CUFF.8053.1
         (591 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV766371                                                     517   e-146
gnl|LJGI|AV772078 weakly similar to UniRef100_Q2RA95 Cluster: PH...   373   e-103

>gnl|LJGI|AV766371 
          Length = 483

 Score =  517 bits (261), Expect = e-146
 Identities = 261/261 (100%)
 Strand = Plus / Minus

                                                                       
Query: 138 tgttcatgatccataccctattgttgatccaacatggaggggaagttggtgcttcagcaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgttcatgatccataccctattgttgatccaacatggaggggaagttggtgcttcagcaa 424

                                                                       
Query: 198 ccaaagttctgatactttcactggactttttgctcatttgtccactttagcatgccccaa 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccaaagttctgatactttcactggactttttgctcatttgtccactttagcatgccccaa 364

                                                                       
Query: 258 agttctggaggagacaagacttttccctgaggtgctttctgctaacttgcttccaagatc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttctggaggagacaagacttttccctgaggtgctttctgctaacttgcttccaagatc 304

                                                                       
Query: 318 tgcagtgtggccaaagggtttctcggaatctgggccaaatgatgagagcattgctcttta 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcagtgtggccaaagggtttctcggaatctgggccaaatgatgagagcattgctcttta 244

                                
Query: 378 tttctttcctgaaagtgaaag 398
           |||||||||||||||||||||
Sbjct: 243 tttctttcctgaaagtgaaag 223


>gnl|LJGI|AV772078 weakly similar to UniRef100_Q2RA95 Cluster: PHD-finger family
           protein, expressed; n=1; Oryza sativa Japonica
           Group|Rep: PHD-finger family protein, expressed - Oryza
           sativa subsp. japonica (Rice), partial (4%)
          Length = 321

 Score =  373 bits (188), Expect = e-103
 Identities = 209/216 (96%)
 Strand = Plus / Minus

                                                                       
Query: 376 tatttctttcctgaaagtgaaagtgttgagagagcctatgacaatttagttgatgacatg 435
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tatttctttcctgaaagtgaaagtgttgagagagcctatgacaatctagttgatgacatg 262

                                                                       
Query: 436 atttcccatgacctgggcataaaagctatgataaaaaatgcagagcttttagtttttcct 495
           ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atttcccatgacctgggcatggaagctatgataaaaaatgcagagcttgtagtttttcct 202

                                                                       
Query: 496 tcaacggttctcccgatcaaacacaggagatttcaagcaaagtattatttgtggggtgtg 555
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tcaacggttctcccgatccaacacaggagatttcaagccaagtattatttgtggggtgtg 142

                                               
Query: 556 tttagggcaaagcaagctgtgttgataagtccttaa 591
           ||||||||||||| ||||||||||||||||||||||
Sbjct: 141 tttagggcaaagccagctgtgttgataagtccttaa 106