Miyakogusa Predicted Gene

Lj0g3v0132109.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0132109.1 CUFF.8038.1
         (351 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70191 similar to UniRef100_A3KQ56 Cluster: Hairy-rela...   143   8e-34
gnl|LJGI|TC82443                                                      139   1e-32

>gnl|LJGI|TC70191 similar to UniRef100_A3KQ56 Cluster: Hairy-related 1; n=1; Danio
           rerio|Rep: Hairy-related 1 - Danio rerio (Zebrafish)
           (Brachydanio rerio), partial (6%)
          Length = 1430

 Score =  143 bits (72), Expect = 8e-34
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                       
Query: 24  aggctcatttgagagccagccgcaaggagtgccctttcaaatccctcttgcattcttctc 83
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggctcatctgagagccagccgcaaggagtgccctttcaaatccctcttgcattcttctc 448

                               
Query: 84  cttcatcatcgtccacaccg 103
           ||||||||| ||||||||||
Sbjct: 449 cttcatcattgtccacaccg 468


>gnl|LJGI|TC82443 
          Length = 689

 Score =  139 bits (70), Expect = 1e-32
 Identities = 110/122 (90%), Gaps = 1/122 (0%)
 Strand = Plus / Plus

                                                                       
Query: 229 tttgaatgtatgatatctagaaataaggtttc-ctattattgtgaattcttgaagttgtc 287
           ||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||
Sbjct: 517 tttgaatgtataatatctagaaataaggtttttctattattgtgtattcttgaagttgtc 576

                                                                       
Query: 288 aattataaaaaagacccttgacccatatacgtttcagtttgatatctatgctttttggag 347
           |||||||||||||||||| | || | ||| |||||||| ||| ||||||||||||| |||
Sbjct: 577 aattataaaaaagaccctcggccgacataggtttcagtatgaaatctatgctttttagag 636

             
Query: 348 at 349
           ||
Sbjct: 637 at 638