Miyakogusa Predicted Gene
- Lj0g3v0132089.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0132089.1 CUFF.8037.1
(337 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW597436 weakly similar to UniRef100_Q3KRE1 Cluster: Po... 525 e-149
gnl|LJGI|TC74621 similar to UniRef100_Q6GLA3 Cluster: Transforme... 72 2e-12
gnl|LJGI|TC73215 similar to UniRef100_Q44594 Cluster: Outer surf... 54 6e-07
gnl|LJGI|FS332474 similar to UniRef100_Q8NUA8 Cluster: ABC-type ... 52 2e-06
gnl|LJGI|FS327840 similar to UniRef100_A7QW72 Cluster: Chromosom... 52 2e-06
gnl|LJGI|TC71326 52 2e-06
gnl|LJGI|TC58392 similar to UniRef100_UPI000056B5B6 Cluster: rib... 52 2e-06
gnl|LJGI|TC63290 50 9e-06
>gnl|LJGI|BW597436 weakly similar to UniRef100_Q3KRE1 Cluster: Popeye
domain-containing 3; n=1; Rattus norvegicus|Rep: Popeye
domain-containing 3 - Rattus norvegicus (Rat), partial
(8%)
Length = 460
Score = 525 bits (265), Expect = e-149
Identities = 268/269 (99%)
Strand = Plus / Plus
Query: 69 agaccccctctctaaacatcatctacgctgtagccggccagactgcaactctacctggtg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaccccctctctaaacatcatctacgctgtagccggccagactgcaactctacctggtg 60
Query: 129 gtcatcatctcacctcatccccttttgctcttgcaaatcgtacttctgctaccctagcta 188
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 gtcatcatctcacctcatccccttttgcacttgcaaatcgtacttctgctaccctagcta 120
Query: 189 ttgcatgcgacatgtgctctactcttctctaggtcgtcctttctgtatccctttgctgga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgcatgcgacatgtgctctactcttctctaggtcgtcctttctgtatccctttgctgga 180
Query: 249 ttttcgcataaagttggaagccataaccctcgaaattttacctatttccttgcacgattc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttcgcataaagttggaagccataaccctcgaaattttacctatttccttgcacgattc 240
Query: 309 aagcttcgatttaaccctccatcagtgat 337
|||||||||||||||||||||||||||||
Sbjct: 241 aagcttcgatttaaccctccatcagtgat 269
>gnl|LJGI|TC74621 similar to UniRef100_Q6GLA3 Cluster: Transformer-2 alpha; n=1;
Xenopus tropicalis|Rep: Transformer-2 alpha - Xenopus
tropicalis (Western clawed frog) (Silurana tropicalis),
partial (8%)
Length = 823
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 263 tggaagccataaccctcgaaattttacctatttccttgcacgattcaagcttcgat 318
||||||| |||||| |||||| || |||| ||||||||||||||||||||||||||
Sbjct: 177 tggaagctataaccttcgaaagttcacctgtttccttgcacgattcaagcttcgat 232
Score = 54.0 bits (27), Expect = 6e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 203 tgctctactcttctctaggtcgtcctttctgtatc-cctttgctgga 248
|||||||||||||||||||||||| || | ||||| |||||||||||
Sbjct: 134 tgctctactcttctctaggtcgtctttcccgtatctcctttgctgga 180
>gnl|LJGI|TC73215 similar to UniRef100_Q44594 Cluster: Outer surface protein D; n=1;
Borrelia afzelii|Rep: Outer surface protein D - Borrelia
afzelii, partial (5%)
Length = 579
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 244 ctggattttcgcataaagttggaagccataaccctcgaaattt 286
|||||||| |||||||||||| | || ||||||||||||||||
Sbjct: 46 ctggatttccgcataaagttgcatgctataaccctcgaaattt 88
>gnl|LJGI|FS332474 similar to UniRef100_Q8NUA8 Cluster: ABC-type transporter, permease
components; n=2; Corynebacterium glutamicum|Rep:
ABC-type transporter, permease components -
Corynebacterium glutamicum (Brevibacterium flavum),
partial (5%)
Length = 716
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 263 tggaagccataaccctcgaaattttacctatttccttgcacgattcaagc 312
||||||| ||| ||||||||| || |||||| ||| ||||||||||||||
Sbjct: 143 tggaagctatacccctcgaaagttcacctatctccctgcacgattcaagc 192
>gnl|LJGI|FS327840 similar to UniRef100_A7QW72 Cluster: Chromosome chr3 scaffold_199,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_199, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 752
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 263 tggaagccataaccctcgaaattttacctatttccttgcacgattcaagc 312
||||||| |||| |||||||| || |||||| ||| ||||||||||||||
Sbjct: 123 tggaagctataagcctcgaaagttcacctatctccctgcacgattcaagc 172
>gnl|LJGI|TC71326
Length = 865
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 263 tggaagccataaccctcgaaattttacctatttccttgcacgattcaagc 312
||||||| ||| ||||||||| || |||||| ||| ||||||||||||||
Sbjct: 58 tggaagctatacccctcgaaagttcacctatctccctgcacgattcaagc 107
>gnl|LJGI|TC58392 similar to UniRef100_UPI000056B5B6 Cluster: ribonuclease P/MRP 38
subunit; n=1; Danio rerio|Rep: ribonuclease P/MRP 38
subunit - Danio rerio, partial (7%)
Length = 783
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 263 tggaagccataaccctcgaaattttacctatttccttgcacgattcaagc 312
||||||| ||| ||||||||| || |||||| ||| ||||||||||||||
Sbjct: 178 tggaagctatacccctcgaaagttcacctatctccctgcacgattcaagc 227
>gnl|LJGI|TC63290
Length = 951
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 246 ggattttcgcataaagttggaagccataaccctcgaaattt 286
|||||| |||||||||||| | || ||||||||||||||||
Sbjct: 2 ggatttccgcataaagttgcatgctataaccctcgaaattt 42