Miyakogusa Predicted Gene

Lj0g3v0130259.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0130259.1 tr|B9GW30|B9GW30_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_646517 PE=4 SV=1,52,0.008,
,CUFF.7886.1
         (399 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS361014 homologue to UniRef100_A7QKA3 Cluster: Chromos...    78   5e-14
gnl|LJGI|TC69397 similar to UniRef100_A7QKA3 Cluster: Chromosome...    78   5e-14

>gnl|LJGI|FS361014 homologue to UniRef100_A7QKA3 Cluster: Chromosome chr2
           scaffold_112, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr2 scaffold_112, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (26%)
          Length = 746

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 131 tttatcattttcttcttggtttggaacgtgaccttggcttatttggtgtacctcacgaat 190
           |||||| ||||||| |||||| |||||| |||  |||| ||||||||| |||||||||||
Sbjct: 722 tttatcgttttcttgttggttgggaacgcgacggtggcgtatttggtgaacctcacgaat 663

                                                          
Query: 191 ttctaggtcaccaaagacacaagcttgttgacattacaagtgttggg 237
           |||| ||| |||||| | || ||   ||||||||| |||||||||||
Sbjct: 662 ttcttggttaccaaacataccagtgcgttgacattgcaagtgttggg 616


>gnl|LJGI|TC69397 similar to UniRef100_A7QKA3 Cluster: Chromosome chr2 scaffold_112,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_112, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (97%)
          Length = 1475

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 131 tttatcattttcttcttggtttggaacgtgaccttggcttatttggtgtacctcacgaat 190
           |||||| ||||||| |||||| |||||| |||  |||| ||||||||| |||||||||||
Sbjct: 873 tttatcgttttcttgttggttgggaacgcgacggtggcgtatttggtgaacctcacgaat 932

                                                          
Query: 191 ttctaggtcaccaaagacacaagcttgttgacattacaagtgttggg 237
           |||| ||| |||||| | || ||   ||||||||| |||||||||||
Sbjct: 933 ttcttggttaccaaacataccagtgcgttgacattgcaagtgttggg 979