Miyakogusa Predicted Gene

Lj0g3v0130099.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0130099.1 Non Chatacterized Hit- tr|J3NBS0|J3NBS0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G1,37.68,0.0007,seg,NULL,CUFF.7876.1
         (387 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75794                                                      363   e-100
gnl|LJGI|TC66173                                                      180   4e-45

>gnl|LJGI|TC75794 
          Length = 416

 Score =  363 bits (183), Expect = e-100
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaggacggcaacaaaagctataaagccaatactcattacaagaacgacatttgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgaaggacggcaacaaaagctataaagccaatactcattacaagaacgacatttgggga 241

                                                                       
Query: 61  gatcttgagtccaggggcatcgtcggtgtaaaactgaagcatagtcccagctgctcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gatcttgagtccaggggcatcgtcggtgtaaaactgaagcatagtcccagctgctcctcc 181

                                                                       
Query: 121 agaggccccaccactggttgttcttcttctcctcatgctagcagcagctgctgcacttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agaggccccaccactggttgttcttcttctcctcatgctagcagcagctgctgcacttcc 121

              
Query: 181 tct 183
           |||
Sbjct: 120 tct 118


>gnl|LJGI|TC66173 
          Length = 710

 Score =  180 bits (91), Expect = 4e-45
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaggacggcaacaaaagctataaagccaatactcattacaagaacgacatttgggga 60
           |||||| | ||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 346 atgaagaatggcaacaaatgctataaagccaatgctcattacaagaaccacatttgggga 287

                                                                       
Query: 61  gatcttgagtccaggggcatcgtcggtgtaaaactgaagcatagtcccagctgctcctcc 120
           ||||||||||||||||||||| || |||||||| ||||||||  |||| |||||||||||
Sbjct: 286 gatcttgagtccaggggcatcatcagtgtaaaattgaagcatgttcccggctgctcctcc 227

                                                                       
Query: 121 agaggccccaccactggttgttcttcttctcctcatgctagcagcagctgctgcacttcc 180
            | |||| ||||||  | || | | |||||||||||||| |||| |||||| ||||||||
Sbjct: 226 cgcggccgcaccaccagctggtttccttctcctcatgcttgcagtagctgcagcacttcc 167

              
Query: 181 tct 183
           |||
Sbjct: 166 tct 164