Miyakogusa Predicted Gene

Lj0g3v0129539.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0129539.1 tr|H9U0F4|H9U0F4_MESVI DEK1-like protein
(Fragment) OS=Mesostigma viride PE=4
SV=1,25.68,6e-18,seg,NULL,CUFF.7840.1
         (1110 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC592924 homologue to UniRef100_A7P092 Cluster: Chromos...   333   1e-90

>gnl|LJGI|DC592924 homologue to UniRef100_A7P092 Cluster: Chromosome chr6 scaffold_3,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_3, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (5%)
          Length = 595

 Score =  333 bits (168), Expect = 1e-90
 Identities = 180/184 (97%)
 Strand = Plus / Plus

                                                                        
Query: 920  ttcttgttgggtggtttgaagataaaccattctttggagcatccgttggttactttatat 979
            |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1    ttctagttgggtggtttgaagataaaccattctttggagcatctgttggttactttatat 60

                                                                        
Query: 980  ttctttttcttcttgctgggcgggcattgacagttttgctttcaaaccctattgtggtat 1039
            ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttctttttcttctagctggacgggcattgacagttttgctttcaaaccctattgtggtat 120

                                                                        
Query: 1040 attctccccgtgttttgccagtgtatgtgtatgatgctcatgcagattgtggaaagaatg 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  attctccccgtgttttgccagtgtatgtgtatgatgctcatgcagattgtggaaagaatg 180

                
Query: 1100 tcag 1103
            ||||
Sbjct: 181  tcag 184