Miyakogusa Predicted Gene

Lj0g3v0129409.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0129409.1 Non Chatacterized Hit- tr|I1H2V2|I1H2V2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.42,0.000000000004,seg,NULL,CUFF.7829.1
         (837 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AI967639 similar to UniRef100_Q2PF39 Cluster: Aminoacyl...    68   1e-10
gnl|LJGI|BP042533                                                      66   4e-10

>gnl|LJGI|AI967639 similar to UniRef100_Q2PF39 Cluster: Aminoacyl-tRNA synthetase;
           n=1; Trifolium pratense|Rep: Aminoacyl-tRNA synthetase -
           Trifolium pratense (Red clover), partial (9%)
          Length = 306

 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 343 caattgcctggccgtactcggagggaagctaaacgcaggtctgtgggtgagattcaatca 402
           |||||||| || |||||| |||||||| ||||||| |||||||| | |||||||||||||
Sbjct: 209 caattgccaggtcgtactaggagggaaactaaacggaggtctgttgatgagattcaatca 268

                                         
Query: 403 agtttgagacgta-gtaagagggcaactag 431
            || | ||||| |  |||||||||||||||
Sbjct: 269 ggtctaagacgcacctaagagggcaactag 298



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 213 tatgatgaagaatatctccggaaacgtaagcagagaagg 251
           |||||||||||||||||   |||||||||||||||||||
Sbjct: 11  tatgatgaagaatatcttaagaaacgtaagcagagaagg 49


>gnl|LJGI|BP042533 
          Length = 243

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 805 gcaaccaaagatgaaggcaatgatgattactga 837
           |||||||||||||||||||||||||||||||||
Sbjct: 243 gcaaccaaagatgaaggcaatgatgattactga 211