Miyakogusa Predicted Gene
- Lj0g3v0128779.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0128779.1 tr|B9I2Z5|B9I2Z5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_661879 PE=4 SV=1,93.33,0,no
description,Calponin homology domain; Calponin-homology domain,
CH-domain,Calponin homology domai,CUFF.7770.1
(363 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome... 335 1e-91
gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosom... 194 3e-49
gnl|LJGI|BP042940 74 7e-13
gnl|LJGI|TC59092 similar to UniRef100_A7PLH0 Cluster: Chromosome... 50 9e-06
>gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (50%)
Length = 815
Score = 335 bits (169), Expect = 1e-91
Identities = 316/364 (86%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 1 atggcgtcgaatataggcatgatggacagtgcttactttgtcggcaggaatgagattctg 60
|||||||| | ||| ||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 323 atggcgtccagtattggcgtgatggatggtgcgtactttgtcggcaggaatgagattctt 382
Query: 61 tcatggatcaacaacaggctccaactcaatctctcgcgcattgaggaggctgcatctggt 120
||||||||||| | || || || || ||||| |||||||||||||| |||||||||
Sbjct: 383 anttggatcaacaatcgccttcaccttaacctctctcgcattgaggaggcggcatctggt 442
Query: 121 gatgtacaatgccagatgatggacatgacgcatccaggggttgttccaatgcacaaggtg 180
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 gccgtacaatgccagatgatggacatgacatttccaggggttgttccaatgcacaaggtg 502
Query: 181 aattttgatgcaaagacggagtatgataagatccagaattacaaaattctgca-ggatgt 239
||||| ||||||||| | |||||||||| |||||| ||||||||| ||||||| ||| ||
Sbjct: 503 aatttcgatgcaaagtcagagtatgatatgatccaaaattacaaagttctgcagggaagt 562
Query: 240 gttcaacaagctgaaaattgacaagcatattgaagttagcaggcttgttaaaggcagacc 299
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 563 gttcaacaaactgaaaattgagaagcatattgaagttagcaggcttgttaaaggtcggcc 622
Query: 300 tttggacaacttggagttcctccaatggctgaaacattactgtgattctgtgaatggtgg 359
||||| ||||| ||||||| || ||| |||| | ||||||||||||||| ||||||||
Sbjct: 623 attggataacttaaagttcctacagtggatgaagcgttactgtgattctgtcaatggtgg 682
Query: 360 catt 363
||||
Sbjct: 683 catt 686
>gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 552
Score = 194 bits (98), Expect = 3e-49
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 93 ctcgcgcattgaggaggctgcatctggtgatgtacaatgccagatgatggacatgacgca 152
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 431 ctcgcacattgaggaggctgcatccggtgatgtacaatgccagatgatagacatgacgca 490
Query: 153 tccaggggttgttccaatgcacaaggtgaattttgatgcaaagacggagtatgataagat 212
|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 491 tccaagagttgttccaatgcacaaggtgaattttgatgcaaagatggagtatgataagat 550
Query: 213 cc 214
||
Sbjct: 551 cc 552
>gnl|LJGI|BP042940
Length = 432
Score = 73.8 bits (37), Expect = 7e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 93 ctcgcgcattgaggaggctgcatctggtgatgtacaatgccagat 137
||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 ctcgcacattgaggaggctgcatccggtgatgtacaatgccagat 432
>gnl|LJGI|TC59092 similar to UniRef100_A7PLH0 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (87%)
Length = 1239
Score = 50.1 bits (25), Expect = 9e-06
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 169 atgcacaaggtgaattttgatgcaaagacggagtatgataagatccagaattacaaaatt 228
||||||||||| ||||| ||||| |||| ||||| |||| ||| ||||||||||| |
Sbjct: 218 atgcacaaggtcaatttcgatgctaagaacgagtacgatatgattcagaattacaaggtg 277
Query: 229 ctgcaggatgtgttcaacaagctgaaaat 257
|| || ||||| |||||||| || |||||
Sbjct: 278 cttcaagatgtcttcaacaaactcaaaat 306