Miyakogusa Predicted Gene

Lj0g3v0128779.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0128779.1 tr|B9I2Z5|B9I2Z5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_661879 PE=4 SV=1,93.33,0,no
description,Calponin homology domain; Calponin-homology domain,
CH-domain,Calponin homology domai,CUFF.7770.1
         (363 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome...   335   1e-91
gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosom...   194   3e-49
gnl|LJGI|BP042940                                                      74   7e-13
gnl|LJGI|TC59092 similar to UniRef100_A7PLH0 Cluster: Chromosome...    50   9e-06

>gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_84, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (50%)
          Length = 815

 Score =  335 bits (169), Expect = 1e-91
 Identities = 316/364 (86%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcgaatataggcatgatggacagtgcttactttgtcggcaggaatgagattctg 60
           |||||||| | ||| ||| |||||||  |||| |||||||||||||||||||||||||| 
Sbjct: 323 atggcgtccagtattggcgtgatggatggtgcgtactttgtcggcaggaatgagattctt 382

                                                                       
Query: 61  tcatggatcaacaacaggctccaactcaatctctcgcgcattgaggaggctgcatctggt 120
              |||||||||||  | || || || || ||||| |||||||||||||| |||||||||
Sbjct: 383 anttggatcaacaatcgccttcaccttaacctctctcgcattgaggaggcggcatctggt 442

                                                                       
Query: 121 gatgtacaatgccagatgatggacatgacgcatccaggggttgttccaatgcacaaggtg 180
           |  ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 443 gccgtacaatgccagatgatggacatgacatttccaggggttgttccaatgcacaaggtg 502

                                                                       
Query: 181 aattttgatgcaaagacggagtatgataagatccagaattacaaaattctgca-ggatgt 239
           ||||| ||||||||| | |||||||||| |||||| ||||||||| ||||||| ||| ||
Sbjct: 503 aatttcgatgcaaagtcagagtatgatatgatccaaaattacaaagttctgcagggaagt 562

                                                                       
Query: 240 gttcaacaagctgaaaattgacaagcatattgaagttagcaggcttgttaaaggcagacc 299
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  | ||
Sbjct: 563 gttcaacaaactgaaaattgagaagcatattgaagttagcaggcttgttaaaggtcggcc 622

                                                                       
Query: 300 tttggacaacttggagttcctccaatggctgaaacattactgtgattctgtgaatggtgg 359
            ||||| |||||  ||||||| || ||| |||| | ||||||||||||||| ||||||||
Sbjct: 623 attggataacttaaagttcctacagtggatgaagcgttactgtgattctgtcaatggtgg 682

               
Query: 360 catt 363
           ||||
Sbjct: 683 catt 686


>gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_84, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 552

 Score =  194 bits (98), Expect = 3e-49
 Identities = 116/122 (95%)
 Strand = Plus / Plus

                                                                       
Query: 93  ctcgcgcattgaggaggctgcatctggtgatgtacaatgccagatgatggacatgacgca 152
           ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 431 ctcgcacattgaggaggctgcatccggtgatgtacaatgccagatgatagacatgacgca 490

                                                                       
Query: 153 tccaggggttgttccaatgcacaaggtgaattttgatgcaaagacggagtatgataagat 212
           |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 491 tccaagagttgttccaatgcacaaggtgaattttgatgcaaagatggagtatgataagat 550

             
Query: 213 cc 214
           ||
Sbjct: 551 cc 552


>gnl|LJGI|BP042940 
          Length = 432

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 93  ctcgcgcattgaggaggctgcatctggtgatgtacaatgccagat 137
           ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 ctcgcacattgaggaggctgcatccggtgatgtacaatgccagat 432


>gnl|LJGI|TC59092 similar to UniRef100_A7PLH0 Cluster: Chromosome chr7 scaffold_20,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_20, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (87%)
          Length = 1239

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                       
Query: 169 atgcacaaggtgaattttgatgcaaagacggagtatgataagatccagaattacaaaatt 228
           ||||||||||| ||||| ||||| ||||  ||||| |||| ||| |||||||||||  | 
Sbjct: 218 atgcacaaggtcaatttcgatgctaagaacgagtacgatatgattcagaattacaaggtg 277

                                        
Query: 229 ctgcaggatgtgttcaacaagctgaaaat 257
           || || ||||| |||||||| || |||||
Sbjct: 278 cttcaagatgtcttcaacaaactcaaaat 306