Miyakogusa Predicted Gene
- Lj0g3v0127649.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0127649.1 tr|F2E7L1|F2E7L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,100,0,Histone H4,Histone
H4; Histone,Histone core; seg,NULL; HISTONEH4,Histone H4; HISTONE
H4,Histone H4; ,CUFF.7695.1
(312 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: H... 618 e-177
gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: H... 452 e-127
gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: H... 357 3e-98
gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone ... 274 3e-73
gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: H... 266 7e-71
gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostr... 234 3e-61
gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: ... 139 1e-32
gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: ... 131 3e-30
gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: h... 119 1e-26
gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: H... 109 1e-23
gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Ho... 68 3e-11
>gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 495
Score = 618 bits (312), Expect = e-177
Identities = 312/312 (100%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 118
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 178
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 238
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 298
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 358
Query: 301 ttcggaggttga 312
||||||||||||
Sbjct: 359 ttcggaggttga 370
>gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 534
Score = 452 bits (228), Expect = e-127
Identities = 291/312 (93%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
|||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 50 atgtctggtcgtggaaagggcggaaagggactcggcaagggcggcgccaagaggcacagg 109
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 110 aaggtgctccgcgacaacatccagggcatcacgaagccggcgattcggaggctggcgagg 169
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
||||| || || ||||||||||| || ||||||||||||||||||||||| ||| |||||
Sbjct: 170 agaggcggtgtcaagaggatcagcggtttgatctatgaggagactaggggagtgctgaag 229
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 230 attttcttggagaacgtgattcgtgatgcggtgacttacacggagcatgctaggaggaag 289
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 300
|| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 290 acggtgactgctatggatgtggtttatgctctcaagaggcagggaagaaccctctatgga 349
Query: 301 ttcggaggttga 312
|| |||||||||
Sbjct: 350 tttggaggttga 361
>gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 492
Score = 357 bits (180), Expect = 3e-98
Identities = 279/312 (89%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
||||| |||||||||||||| ||||||||| | || ||||||||||| |||||||| |
Sbjct: 16 atgtcgggtcgtggaaagggaggcaagggattgggaaagggaggagcaaagaggcatcgc 75
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 76 aaggtgctgcgcgacaacatccagggaatcacgaagccggcgattcggagattggcgaga 135
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
||||| || ||||||||||||||||| |||||||||||||| || || || ||| | |||
Sbjct: 136 agaggcggagtgaagaggatcagtggcttgatctatgaggaaaccagaggggtgctcaag 195
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
|| || | ||||||||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct: 196 atttttctcgagaatgtgattcgtgatgcggttacatacaccgagcatgcgaggaggaag 255
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 300
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 256 actgttactgctatggatgttgtttatgctcttaagaggcagggaaggaccctctatgga 315
Query: 301 ttcggaggttga 312
||||| ||||||
Sbjct: 316 ttcgggggttga 327
>gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone H4; n=1; Tetraodon
nigroviridis|Rep: Histone H4 - Tetraodon nigroviridis
(Green puffer), partial (45%)
Length = 681
Score = 274 bits (138), Expect = 3e-73
Identities = 261/302 (86%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
|||||||| |||||||| || ||||||||| | || ||||||||||| || | ||| |
Sbjct: 93 atgtctgggcgtggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgt 152
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
||||| || ||||||||||| ||||| ||||||||||| ||||||||| | ||||| |
Sbjct: 153 aaggttctccgcgacaacattcagggaatcacgaagccagcgattcggcgtttggctcgc 212
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
|| |||||||||||| | |||||||| |||||||||||||||||| | ||||| |||||
Sbjct: 213 aggggtggcgtgaagcgtatcagtggcttgatctatgaggagactcgtggtgttctgaag 272
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
||||| | |||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 273 atctttcttgagaatgtgattcgtgatgctgttacctacactgagcatgctaggaggaag 332
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 300
||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 333 actgttactgctatggatgttgtgtatgctctcaagaggcagggaagaaccctctatgga 392
Query: 301 tt 302
||
Sbjct: 393 tt 394
>gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: Homolog of Homo
sapiens "H2A histone family, member X (H2AFX), mRNA;
n=1; Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (33%)
Length = 603
Score = 266 bits (134), Expect = 7e-71
Identities = 260/302 (86%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
|||||||| |||||||| || || || ||| | ||||||||||||||||| ||||| |
Sbjct: 67 atgtctgggcgtggaaaaggaggtaaaggattgggcaagggaggagccaaacggcaccgt 126
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
||||| || ||||||||||||||||| ||||||||||| ||||||||| | ||||| |
Sbjct: 127 aaggtcctccgcgacaacatccagggaatcacgaagccagcgattcggcgtttggctcgc 186
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
|| |||||||||||| | |||||||| |||||||||||||||||| | ||||| | |||
Sbjct: 187 aggggtggcgtgaagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaag 246
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
||||| | |||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 247 atctttcttgagaatgtgattcgtgatgctgttacctacactgagcatgctaggaggaag 306
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 300
||||| ||||| |||||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct: 307 actgttactgccatggatgtggtgtatgctctcaagagacagggaaggacactctatgga 366
Query: 301 tt 302
||
Sbjct: 367 tt 368
>gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostreococcus lucimarinus
CCE9901|Rep: Histone H4 - Ostreococcus lucimarinus
(strain CCE9901), complete
Length = 626
Score = 234 bits (118), Expect = 3e-61
Identities = 247/290 (85%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
|||||||| |||||||| || ||||||||| | || ||||||||||| || | ||| |
Sbjct: 96 atgtctgggcgtggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgt 155
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
||||| || ||||||||||| ||||| ||||||||||| ||||||||| | ||||| |
Sbjct: 156 aaggttctccgcgacaacattcagggaatcacgaagccagcgattcggcgattggctcgc 215
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
|| |||||||||||| | |||||||| |||||||||||||||||| | ||||| | |||
Sbjct: 216 aggggtggcgtgaagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaag 275
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
||||| | |||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 276 atctttctcgagaatgtgattcgtgatgctgttacctacactgagcatgctaggaggaag 335
Query: 241 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggac 290
||||| ||||| |||||||| || |||||||||||||| |||||||||||
Sbjct: 336 actgttactgccatggatgtggtgtatgctctcaagagacagggaaggac 385
>gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (96%)
Length = 529
Score = 139 bits (70), Expect = 1e-32
Identities = 241/298 (80%)
Strand = Plus / Plus
Query: 13 ggaaagggtggcaagggactcggcaagggaggagccaagaggcacaggaaggtgctgcgc 72
|||||||| |||||||| | |||||||||||||| ||| | ||||||||||| ||| |
Sbjct: 79 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 138
Query: 73 gacaacatccagggcatcacgaagccggcgattcggaggttggcgaggagaggtggcgtg 132
|| ||||||||||| ||||| ||||| |||||||| | | || ||| | || || |||
Sbjct: 139 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 198
Query: 133 aagaggatcagtgggttgatctatgaggagactaggggtgtgttgaagatcttcttggag 192
||| | ||||| || | |||||||| || ||| | ||||| | ||||||||| | |||
Sbjct: 199 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 258
Query: 193 aatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaagactgtgactgct 252
|| || ||||| ||||| ||||| ||||| ||||| ||| | | ||||||||||| ||
Sbjct: 259 aacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaagactgtgacggcg 318
Query: 253 atggatgttgtttatgctctcaagaggcagggaaggactctctatggattcggaggtt 310
|||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 319 atggatgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 376
>gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, partial (79%)
Length = 372
Score = 131 bits (66), Expect = 3e-30
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 1 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 60
||||| || |||||||| || ||||||||| | || ||||||||||| || | ||| |
Sbjct: 125 atgtcagggcgtggaaaaggaggcaagggattaggaaagggaggagcaaaacgacaccgt 184
Query: 61 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 120
||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| |
Sbjct: 185 aaggtgctgcgcgacaacatccagggcataaccaagccggcgattcggcgtttggcgcgt 244
Query: 121 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 180
|| || ||||||||| | ||||| || | |||||||||||||| | || ||| | |||
Sbjct: 245 aggggcggcgtgaagcgtatcagcggccttatctatgaggagacacgcggcgtgctcaag 304
Query: 181 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 240
||||| | ||||||||||| || ||||| || || ||||| ||||| || |||||||||
Sbjct: 305 atctttctcgagaatgtgatccgggatgctgttacctacactgagcacgcgaggaggaag 364
Query: 241 ac 242
||
Sbjct: 365 ac 366
>gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, complete
Length = 612
Score = 119 bits (60), Expect = 1e-26
Identities = 237/296 (80%)
Strand = Plus / Plus
Query: 13 ggaaagggtggcaagggactcggcaagggaggagccaagaggcacaggaaggtgctgcgc 72
|||||||| |||||||| | || ||||||||||| ||| | ||||||||||| ||| |
Sbjct: 70 ggaaagggaggcaagggtttgggaaagggaggagcgaagcgtcacaggaaggttctgagg 129
Query: 73 gacaacatccagggcatcacgaagccggcgattcggaggttggcgaggagaggtggcgtg 132
|| ||||||||||| ||||| ||||| || ||||| | | || ||| | ||||| |||
Sbjct: 130 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 189
Query: 133 aagaggatcagtgggttgatctatgaggagactaggggtgtgttgaagatcttcttggag 192
||| | ||||| || | |||||||| || ||| | ||||| | ||||||||| | |||
Sbjct: 190 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 249
Query: 193 aatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaagactgtgactgct 252
|| || ||||||||||| || || ||||| ||||| ||| | | ||||||||||| ||
Sbjct: 250 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 309
Query: 253 atggatgttgtttatgctctcaagaggcagggaaggactctctatggattcggagg 308
||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 310 atggacgttgtttacgctctcaagaggcagggcaggaccctctatggttttggagg 365
>gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (97%)
Length = 590
Score = 109 bits (55), Expect = 1e-23
Identities = 217/271 (80%)
Strand = Plus / Plus
Query: 40 ggaggagccaagaggcacaggaaggtgctgcgcgacaacatccagggcatcacgaagccg 99
|||||||| ||| | ||| ||||||| ||| | || ||||||||||| ||||| |||||
Sbjct: 112 ggaggagcgaagcgtcaccggaaggttctgagggataacatccagggaatcaccaagcct 171
Query: 100 gcgattcggaggttggcgaggagaggtggcgtgaagaggatcagtgggttgatctatgag 159
|||||||| | | || ||| | || || |||||| | ||||| || | ||||||||
Sbjct: 172 gcgattcgccgtctcgcaaggcgtggcggtgtgaagcgtatcagcggtctcatctatgaa 231
Query: 160 gagactaggggtgtgttgaagatcttcttggagaatgtgattcgtgatgcggtgacgtac 219
|| ||| | ||||| | ||||||||| | ||||| || ||||| ||||| ||||| |||
Sbjct: 232 gaaactcgcggtgttctcaagatcttcctcgagaacgttattcgcgatgctgtgacctac 291
Query: 220 acggagcatgctaggaggaagactgtgactgctatggatgttgtttatgctctcaagagg 279
|| ||||| ||| | | ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 292 actgagcacgctcgccgtaagactgtgacggcgatggatgttgtttacgctctcaagagg 351
Query: 280 cagggaaggactctctatggattcggaggtt 310
||||| ||||| |||||||| ||||| ||||
Sbjct: 352 cagggcaggaccctctatggtttcggtggtt 382
>gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Homolog of Homo sapiens
"H2A histone family, member X (H2AFX), mRNA; n=1;
Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (23%)
Length = 650
Score = 67.9 bits (34), Expect = 3e-11
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 151 atctatgaggagactaggggtgtgttgaagatcttcttggagaatgtgattcgtgatgcg 210
||||||||||||||| | |||||||| ||||||| | ||||| ||||| | |||||
Sbjct: 461 atctatgaggagactcgcagtgtgttgtagatctttctcgagaacgtgatctgcgatgct 520
Query: 211 gtgacgtacacggagcatgctaggaggaagactgtgactgctatggatgttgtttatgct 270
|||| ||||| ||||| | | | |||||| |||| || |||||| | |||||||||
Sbjct: 521 atgacctacactgagcacaccaagtggaagatgatgaccgccatggatatcgtttatgct 580
Query: 271 ctcaagaggcagggaaggactctctatggattcggaggttga 312
|||||||||||||| ||||| ||||| ||||| || ||||||
Sbjct: 581 ctcaagaggcagggcaggaccctctacggatttggtggttga 622