Miyakogusa Predicted Gene
- Lj0g3v0127099.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0127099.1 Non Chatacterized Hit- tr|D7M2A1|D7M2A1_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,25.99,1e-17,ZF_PHD_2,Zinc finger, PHD-finger; PLUS3,Plus-3;
SWIB/MDM2 domain,SWIB/MDM2 domain; FYVE/PHD zinc fin,CUFF.7851.1
(1857 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71243 weakly similar to UniRef100_Q7XCX5 Cluster: Plu... 686 0.0
gnl|LJGI|AV409088 similar to UniRef100_A7QE25 Cluster: Chromosom... 668 0.0
gnl|LJGI|TC64228 similar to UniRef100_A7P7X7 Cluster: Chromosome... 438 e-122
gnl|LJGI|BW620673 331 9e-90
gnl|LJGI|TC75488 similar to UniRef100_A7P7X7 Cluster: Chromosome... 72 1e-11
>gnl|LJGI|TC71243 weakly similar to UniRef100_Q7XCX5 Cluster: Plus-3 domain
containing protein, expressed; n=1; Oryza sativa
Japonica Group|Rep: Plus-3 domain containing protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(4%)
Length = 598
Score = 686 bits (346), Expect = 0.0
Identities = 346/346 (100%)
Strand = Plus / Minus
Query: 1 atggagcaatcgccggggtcgaaggtcgttagagttgcatcggagcttctcaacggtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atggagcaatcgccggggtcgaaggtcgttagagttgcatcggagcttctcaacggtagg 289
Query: 61 ggtttagaggagtcgaagaagctcgacggagtatctggcatggcggagagaccagcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggtttagaggagtcgaagaagctcgacggagtatctggcatggcggagagaccagcacct 229
Query: 121 gcagtcgccgacggtgtcgttttgaagaggaagcgaggtcggccggctaagggggtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gcagtcgccgacggtgtcgttttgaagaggaagcgaggtcggccggctaagggggtttct 169
Query: 181 aaaacagctccgcctcctcctccgccgaagcagccggaggatgaggaggacgtttgcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aaaacagctccgcctcctcctccgccgaagcagccggaggatgaggaggacgtttgcttc 109
Query: 241 atatgcttcgatggcgggagcctcgtcctctgcgatcgccggggttgccccaaagcgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atatgcttcgatggcgggagcctcgtcctctgcgatcgccggggttgccccaaagcgtat 49
Query: 301 catcctgcatgcgttaaacgagatgaagcgttcttcagttcaaagg 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 catcctgcatgcgttaaacgagatgaagcgttcttcagttcaaagg 3
>gnl|LJGI|AV409088 similar to UniRef100_A7QE25 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 337
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Plus
Query: 698 ttcacactccccatgaactttatcatcttaaagatgaaaaaggttctggttctgagaact 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcacactccccatgaactttatcatcttaaagatgaaaaaggttctggttctgagaact 60
Query: 758 cctgtatagacttagaatcaaataatctgaaaaataagaggcctaagagacagcaaaagt 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctgtatagacttagaatcaaataatctgaaaaataagaggcctaagagacagcaaaagt 120
Query: 818 ttcttaataaaggcgactgcgtggataggataacttcaggtagtgacactggcgtgtcat 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttaataaaggcgactgcgtggataggataacttcaggtagtgacactggcgtgtcat 180
Query: 878 tgcctgaaggcacgaagtgggcatccaaggagctcctagagtttgttgcacatatgaaaa 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcctgaaggcacgaagtgggcatccaaggagctcctagagtttgttgcacatatgaaaa 240
Query: 938 atggggatacatctctcctgactcaatttgatgtccagactctcttgctggagtatgtta 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggggatacatctctcctgactcaatttgatgtccagactctcttgctggagtatgtta 300
Query: 998 agaaaaacaatctccgtgatccccaacagaaatccca 1034
|||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaaaaacaatctccgtgatccccaacagaaatccca 337
>gnl|LJGI|TC64228 similar to UniRef100_A7P7X7 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 2707
Score = 438 bits (221), Expect = e-122
Identities = 457/535 (85%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 220 gatgaggaggacgtttgcttcatatgcttcgatggcgggagcctcgtcctctgcgatcgc 279
|||||||| || || |||||||| |||||||| || || |||||| |||||||||||
Sbjct: 299 gatgaggaagatgtctgcttcatctgcttcgacggtggatccctcgttctctgcgatcga 358
Query: 280 cggggttgccccaaagcgtatcatcctgcatgcgttaaacgagatgaagcgttcttcagt 339
||||||||||| ||||| |||||||| | || ||||| |||||||| ||||||||| ||
Sbjct: 359 cggggttgccctaaagcatatcatccctcctgtgttaagcgagatgaggcgttcttccgt 418
Query: 340 tcaaaggccaagtggaattgcggttggcatatatgtagctcttgtgagaaggcatcccat 399
||||||||||| |||||||||||||||||| |||||| | |||| |||| ||||||||
Sbjct: 419 tcaaaggccaaatggaattgcggttggcatctatgtaccaaatgtgcgaagacatcccat 478
Query: 400 tatatgtgctatacttgcacgtattccgtgtgcaaggggtgtatagatgatgctgatttt 459
|||||||||||||| || | ||||| ||||||| | |||| | | | ||||||||||
Sbjct: 479 tatatgtgctatacatgtccctattctttgtgcaaaagatgtacaaaaggtgctgatttt 538
Query: 460 gtctttgtcagaggaaataagggtttgtgtggaatatgcatgaaaactataatgctgatt 519
||| |||||||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 539 gtcagtgtcagagaaaacaaaggtttctgtggaatatgcatgaaaactataatgctgatt 598
Query: 520 gaggaaagtgctgagggaaataaggacaagtgtgaagtggattttgatgacaagagcagt 579
||| | ||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 599 gagaacagtgcccagggaaatgag---aagtgtgaagtggattttgatgacaaaagcagt 655
Query: 580 tgggagtatctgttcaaggtgtactggatgtatttgaaagagaagctatctttaacgttt 639
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct: 656 tgggagtatcttttcaaggtgtattggatgtatttgaaagagaagctatctttaacttgt 715
Query: 640 gatgagatccttcgagctagaaactcttgcaaagttgctgctcctatgagctctaaactt 699
|||||| |||||||||||| |||| | || |||| ||||||| |||||| | || ||
Sbjct: 716 gatgagctccttcgagctaaaaacccgtggaaaggtgctgcttctatgaagtgcaaggtt 775
Query: 700 cacactccccatgaactttatcatcttaaagatgaaaaaggttctggttctgaga 754
|| |||||||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 776 caaactccccaggaactttatcatcctaaagttgaacaaggttctggttctgaga 830
>gnl|LJGI|BW620673
Length = 486
Score = 331 bits (167), Expect = 9e-90
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 atggagcaatcgccggggtcgaaggtcgttagagttgcatcggagcttctcaacggtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atggagcaatcgccggggtcgaaggtcgttagagttgcatcggagcttctcaacggtagg 379
Query: 61 ggtttagaggagtcgaagaagctcgacggagtatctggcatggcggagagaccagcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtttagaggagtcgaagaagctcgacggagtatctggcatggcggagagaccagcacct 439
Query: 121 gcagtcgccgacggtgtcgttttgaagaggaagcgaggtcggccggc 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagtcgccgacggtgtcgttttgaagaggaagcgaggtcggccggc 486
>gnl|LJGI|TC75488 similar to UniRef100_A7P7X7 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (25%)
Length = 706
Score = 71.9 bits (36), Expect = 1e-11
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1401 tggttcttttgtgcggataagaatttctagtggtgatcagaaacaagatatgtataggct 1460
||||||||||||| | |||||||||||| || ||| |||||| ||||| ||||||||||
Sbjct: 526 tggttcttttgtgagaataagaatttctggtagtgctcagaagcaagacttgtataggct 585
Query: 1461 tgtccaagttgtaggtacaagcaa 1484
|| || |||||||||||| ||||
Sbjct: 586 ggttcaggttgtaggtacatgcaa 609