Miyakogusa Predicted Gene

Lj0g3v0126989.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0126989.1 Non Chatacterized Hit- tr|B9FBZ9|B9FBZ9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.34,1e-16,seg,NULL; Patched,Patched; NIEMANN-PICK C1,NULL;
PATCHED-RELATED,NULL; SSD,Sterol-sensing domain,CUFF.7670.1
         (276 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79988 similar to UniRef100_A7QPC0 Cluster: Chromosome...    60   7e-09
gnl|LJGI|TC64397 similar to UniRef100_A7QPC0 Cluster: Chromosome...    58   3e-08

>gnl|LJGI|TC79988 similar to UniRef100_A7QPC0 Cluster: Chromosome chr18 scaffold_137,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_137, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 528

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 90/110 (81%)
 Strand = Plus / Plus

                                                                       
Query: 163 tcttctttctacctctcgtctaaggtattgcttggtcttttgggggttttgcttgttgtg 222
           |||||||||||  | || || |||||||||||||||||||  || ||  | || ||| ||
Sbjct: 21  tcttctttctatatttcttcaaaggtattgcttggtctttcaggagtaattctcgttatg 80

                                                             
Query: 223 ctttctgtccttggatcagttggacttttcagtgctcttggagtaaaatc 272
           || |||||||||||||||||||   |||| ||||| ||||| ||||||||
Sbjct: 81  ctgtctgtccttggatcagttgccatttttagtgcccttggtgtaaaatc 130


>gnl|LJGI|TC64397 similar to UniRef100_A7QPC0 Cluster: Chromosome chr18 scaffold_137,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_137, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 718

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 31  ttttcatctgaaagttcaattgaggaagaattgaagagagaaagcactgccgatatcata 90
           ||||| |||||||| || ||||||||||| ||||| |||||||| ||||| |||   || 
Sbjct: 375 ttttcgtctgaaagctccattgaggaagagttgaaaagagaaagtactgctgatgctatt 434

                                                    
Query: 91  acaatacttgtgagctatattgtcatgtttgcttatatatc 131
           || ||| | || |||||  |||| |||||||||||||||||
Sbjct: 435 actatattggttagctaccttgtgatgtttgcttatatatc 475