Miyakogusa Predicted Gene

Lj0g3v0125239.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0125239.1 Non Chatacterized Hit- tr|I1IIF1|I1IIF1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,65.22,0.000001,seg,NULL; PREDICTED PROTEIN (FRAGMENT),NULL; FAMILY
NOT NAMED,NULL; DEAD,DNA/RNA helicase,
DEAD/DEAH,NODE_33699_length_851_cov_28.490011.path2.1
         (858 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW596008 similar to UniRef100_Q9ZRZ8 Cluster: DEAD-box ...   793   0.0  

>gnl|LJGI|BW596008 similar to UniRef100_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA
           helicase 28; n=1; Arabidopsis thaliana|Rep: DEAD-box
           ATP-dependent RNA helicase 28 - Arabidopsis thaliana
           (Mouse-ear cress), partial (7%)
          Length = 471

 Score =  793 bits (400), Expect = 0.0
 Identities = 419/428 (97%)
 Strand = Plus / Plus

                                                                       
Query: 54  agaagaagagcgcaagggagggtcagaatcagaaaaagagcgcaaggaatcggcacagtc 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  agaagaagagcgcaagggagggtcagaatcagaaaaagagcgcaaggaatcggcacagtc 103

                                                                       
Query: 114 tccgtggaacttcgccaagtacacggaatccgtggcggaggaatacgctcgcaggaacac 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tccgtggaacttcgccaagtacacggaatccgtggcggaggaatacgctcgcaggaacac 163

                                                                       
Query: 174 cacctcaatcgaccacaaaatctccaacgcccttctcaaacaccaccgccgtattcctat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cacctcaatcgaccacaaaatctccaacgcccttctcaaacaccaccgccgtattcctat 223

                                                                       
Query: 234 tcctattcctgactccgaccctgatcatcaagaagattatagaccggaagaagaagaaga 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcctattcctgactccgaccctgatcatcaagaagattatagaccggaagaagaagaaga 283

                                                                       
Query: 294 tgagggcaatgctgatgctggcgatgacgacaagtcnnnnnnnnctccttctgatggaat 353
           ||||||||||||||||||||||||||||||||||||        ||||||||||||||||
Sbjct: 284 tgagggcaatgctgatgctggcgatgacgacaagtcttttttttctccttctgatggaat 343

                                                                       
Query: 354 ctctttccatgctgattccttcttgcacctcaatttgtcacgccctttactccgggcttg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctctttccatgctgattccttcttgcacctcaatttgtcacgccctttactccgggcttg 403

                                                                       
Query: 414 tcaggccttgggctatattcatccaacgccaattcaggccgcttgcataccattggcatt 473
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 404 tcaggccttgggctatattcatccaacaccaattcaggccgcttgcataccattggcatt 463

                   
Query: 474 gagtggtc 481
           ||||||||
Sbjct: 464 gagtggtc 471