Miyakogusa Predicted Gene

Lj0g3v0123899.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0123899.1 tr|G4V504|G4V504_9POTY Polyprotein OS=Tomato mild
mottle virus PE=3 SV=1,52.17,3.2, ,CUFF.7465.1
         (295 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW611476 similar to UniRef100_Q9ZTV1 Cluster: Chaperoni...    88   3e-17
gnl|LJGI|TC67049 similar to UniRef100_Q8GW64 Cluster: Peptidyl-t...    72   2e-12

>gnl|LJGI|BW611476 similar to UniRef100_Q9ZTV1 Cluster: Chaperonin 60 alpha subunit;
           n=1; Canavalia lineata|Rep: Chaperonin 60 alpha subunit
           - Canavalia lineata, partial (11%)
          Length = 475

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 74  tttggataattggattgattagcattagaaaatgccctgcaagtttgt 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 tttggataattggattgattagcataagaaaatgccctgcaagtttgt 396


>gnl|LJGI|TC67049 similar to UniRef100_Q8GW64 Cluster: Peptidyl-tRNA hydrolase,
            chloroplast precursor; n=1; Arabidopsis thaliana|Rep:
            Peptidyl-tRNA hydrolase, chloroplast precursor -
            Arabidopsis thaliana (Mouse-ear cress), partial (10%)
          Length = 1343

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 46/48 (95%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                            
Query: 4    ggcaaccagttacaaaaggaccctctgttagtcattataccaagctgt 51
            ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1297 ggcaaccagctacaaaag-accctctgttagtcattataccaagctgt 1343