Miyakogusa Predicted Gene
- Lj0g3v0123479.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0123479.1 tr|G7JX91|G7JX91_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g057710 PE=4
SV=1,41.9,0.00000000006,F_box_assoc_1: F-box protein interaction
domain,F-box associated interaction domain; FBA_1,F-box
ass,CUFF.7405.1
(868 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW621082 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 266 2e-70
gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 234 7e-61
gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease ... 133 2e-30
gnl|LJGI|BP051420 127 1e-28
gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 94 2e-18
gnl|LJGI|DC593954 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 88 1e-16
gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 76 4e-13
gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 76 4e-13
gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 62 6e-09
gnl|LJGI|TC68257 52 6e-06
>gnl|LJGI|BW621082 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 462
Score = 266 bits (134), Expect = 2e-70
Identities = 137/138 (99%)
Strand = Plus / Plus
Query: 1 atgcctgcacccgccacagagctaggttaccctcttcgtgacaacttcaatttgatcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcctgcacccgccacagagctaggttaccctcttcgtgacaacttcaatttgatcatg 384
Query: 61 gactcttgcgacggcatcgtcctcgtctgcgccaattacaagagatgtatttttctatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 gactcttgcgacggcatcgtcctcgtctgcgccaattacaagagatgtattgttctatgg 444
Query: 121 aacccttccactcggaga 138
||||||||||||||||||
Sbjct: 445 aacccttccactcggaga 462
>gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (19%)
Length = 803
Score = 234 bits (118), Expect = 7e-61
Identities = 213/245 (86%), Gaps = 6/245 (2%)
Strand = Plus / Plus
Query: 203 catatgggtttggttatgataatcttgctgatagttacaaagtagttgcagttttctact 262
|||| |||||||||| ||||||||||||||||| |||||||||||||| ||| ||| ||
Sbjct: 556 catacgggtttggttgcgataatcttgctgatagatacaaagtagttgctgttctctgct 615
Query: 263 atgaaactga------tactgggggttacagaaaaaacaaaactaattttgggttttaca 316
|||||||||| |||||||||||||| |||||||||||| || || ||||||||
Sbjct: 616 atgaaactgattctgatactgggggttacaagaaaaacaaaactgatgctgagttttaca 675
Query: 317 aaacacaagtgaaggttcatactttaggtactcattcttggagggagattcaagagtttc 376
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct: 676 gaacacaagtccaggttcatactttaggtactcatgcttggagggagattcaagacttcc 735
Query: 377 cttcttgtgtcccttttactggagcaggaagatttgtgagtggcactgttaattggttgg 436
|||| ||||||||||| |||||| |||||| |||| ||| ||||||| ||||||||||||
Sbjct: 736 cttcatgtgtccctttcactggaacaggaaaatttctgaatggcactcttaattggttgg 795
Query: 437 tttct 441
|||||
Sbjct: 796 tttct 800
Score = 141 bits (71), Expect = 8e-33
Identities = 137/159 (86%)
Strand = Plus / Plus
Query: 1 atgcctgcacccgccacagagctaggttaccctcttcgtgacaacttcaatttgatcatg 60
|||||||| |||||||||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 362 atgcctgcccccgccacagagctaggttaccctctgagtaacattttcaatttcgtcatg 421
Query: 61 gactcttgcgacggcatcgtcctcgtctgcgccaattacaagagatgtatttttctatgg 120
|| | |||| | |||||| || | || ||| |||||| |||||||||||| ||||||||
Sbjct: 422 gatttttgccatggcatcatcatggtgtgcttcaattataagagatgtattcttctatgg 481
Query: 121 aacccttccactcggagattcaaagagttgccgcgtttg 159
|||||||| ||||||| ||||||||||||||||||||||
Sbjct: 482 aacccttctactcggatattcaaagagttgccgcgtttg 520
>gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease of the
drug/metabolite transporter (DMT) superfamily; n=1;
Synechococcus sp. WH 7803|Rep: Permease of the
drug/metabolite transporter (DMT) superfamily -
Synechococcus sp. (strain WH7803), partial (7%)
Length = 738
Score = 133 bits (67), Expect = 2e-30
Identities = 160/191 (83%)
Strand = Plus / Plus
Query: 312 ttacaaaacacaagtgaaggttcatactttaggtactcattcttggagggagattcaaga 371
|||||||||||||||||||||| | ||||| ||| ||||||||||| | ||||||||
Sbjct: 150 ttacaaaacacaagtgaaggtttacactttgggtttagattcttggaggcaaattcaaga 209
Query: 372 gtttccttcttgtgtcccttttactggagcaggaagatttgtgagtggcactgttaattg 431
|||||||| ||||||||||| || | ||||||||||||||||||||| | |||||||
Sbjct: 210 ttttccttcaggtgtcccttttgatgaaacaggaagatttgtgagtggcagtcttaattg 269
Query: 432 gttggtttctgatgagtccaactggtttattaattctcttgatttggggaaggagagtta 491
||||| |||| ||| || | ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 270 gttggcgtctgttgattcgagttgggttattgtttctcttgatttggggaaggaatgtta 329
Query: 492 tcaaaaacttt 502
|||| ||||||
Sbjct: 330 tcaagaacttt 340
Score = 61.9 bits (31), Expect = 6e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 593 atgtttggcttatgatggagtatggaaatcaaaagtcttggactaaactattcagtgtt 651
||||||||||||||| ||||||||||||| || |||| ||||| ||| | |||||||||
Sbjct: 428 atgtttggcttatgaaggagtatggaaataaagagtcctggaccaaaattttcagtgtt 486
Score = 54.0 bits (27), Expect = 1e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 205 tatgggtttggttatgataatcttgctgatagttacaaagtagttgcagttttctactat 264
||||||||||| |||||| || | ||||||||| ||||| ||||||||||||| ||||
Sbjct: 67 tatgggtttggctatgatcatttcagtgatagttataaagttgttgcagttttctgctat 126
Query: 265 gaa 267
|||
Sbjct: 127 gaa 129
>gnl|LJGI|BP051420
Length = 530
Score = 127 bits (64), Expect = 1e-28
Identities = 97/108 (89%)
Strand = Plus / Minus
Query: 761 attccaaagacggcactttgaaaagtctccaaatacaaattcccgatgcttgtatttcta 820
|||||| |||||||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct: 522 attccagagacggcactttgaaaagtctccaaatacatattccgtatggttttatttcac 463
Query: 821 tggtctcatgggtctatgtagaaagtttggtatcaccttgcttttgat 868
|| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 462 tgttctcaggggtctatgtagaaagtttgatatcaccttgcttttgat 415
>gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 542
Score = 93.7 bits (47), Expect = 2e-18
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 593 atgtttggcttatgatggagtatggaaatcaaaagtcttggactaaactattcagtgttg 652
||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |
Sbjct: 50 atgtttggcttatgaaggagtatggaaatcaacagtcttggactaaattattcagtgtcg 109
Query: 653 cca 655
|||
Sbjct: 110 cca 112
>gnl|LJGI|DC593954 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 574
Score = 87.7 bits (44), Expect = 1e-16
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 211 tttggttatgataatcttgctgatagttacaaagtagttgcagttttctactatga 266
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||
Sbjct: 475 tttggttatgataatcttgctgatcgttacaaagtagttgctgttttctgctatga 530
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 113 ttctatggaacccttccactcggagattcaaagagttgccgc 154
|||| ||||||||||||||||||||||||||| | |||||||
Sbjct: 389 ttctgtggaacccttccactcggagattcaaaaacttgccgc 430
>gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 1418
Score = 75.8 bits (38), Expect = 4e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 214 ggttatgataatcttgctgatagttacaaagtagttgcagttttctactatgaa 267
||||||||| || ||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 631 ggttatgatcattttgctgacagttacaaagtagttgcagttttctgctatgaa 684
Score = 60.0 bits (30), Expect = 2e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 311 tttacaaaacacaagtgaaggttcatactttaggtactcattcttggagggagattcaag 370
||||||||||||||| || |||||||||||||||| |||| ||||||| ||||||||
Sbjct: 701 tttacaaaacacaagccaatattcatactttaggtacacattgttggaggaggattcaag 760
Query: 371 ag 372
||
Sbjct: 761 ag 762
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 458 ttattaattctcttgatttggggaaggagagttatcaaaaacttttgc 505
|||||| ||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 881 ttattatttctcaggatttgaggaaggagtgttatcaaaaacttttgc 928
Score = 54.0 bits (27), Expect = 1e-06
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 596 tttggcttatgatggagtatggaaatcaaaagtcttggactaaactattca 646
||||| |||||| ||||||||||| | || |||||||||||||| ||||||
Sbjct: 1040 tttggtttatgaaggagtatggaagtaaagagtcttggactaaattattca 1090
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 831 ggtctatgtagaaagtttggtatcaccttgcttttgat 868
||||||||||||||||||| |||| ||||| |||||||
Sbjct: 1257 ggtctatgtagaaagtttgatatcgccttgtttttgat 1294
>gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (12%)
Length = 786
Score = 75.8 bits (38), Expect = 4e-13
Identities = 108/130 (83%), Gaps = 6/130 (4%)
Strand = Plus / Plus
Query: 312 ttacaaaacacaagtgaaggttcatactttaggtactcattcttggagggagattcaaga 371
|||| |||||||||| ||||||||||| || |||||||||| ||||||| ||||||||||
Sbjct: 650 ttaccaaacacaagtcaaggttcatacattgggtactcattgttggaggaagattcaaga 709
Query: 372 gt---ttccttcttgtgtcccttttactgg---agcaggaagatttgtgagtggcactgt 425
| |||||||||||| ||||| ||| | |||||| ||||||||||| |||| |
Sbjct: 710 cttccttccttcttgtgaacctttcgttggaacaacaggaatatttgtgagtgacactct 769
Query: 426 taattggttg 435
||||||||||
Sbjct: 770 taattggttg 779
>gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 447
Score = 61.9 bits (31), Expect = 6e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 596 tttggcttatgatggagtatggaaatcaaaagtcttggactaaactattca 646
|||||||||||| ||||||||||| | || |||||||||||||| ||||||
Sbjct: 409 tttggcttatgaaggagtatggaagtaaagagtcttggactaaattattca 359
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 831 ggtctatgtagaaagtttggtatcaccttgcttttgat 868
||||||||||||||||||| |||||||||| |||||||
Sbjct: 107 ggtctatgtagaaagtttgatatcaccttgtttttgat 70
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 831 ggtctatgtagaaagtttggtatcaccttgctttt 865
||||||||||||||||||| |||||||||| ||||
Sbjct: 192 ggtctatgtagaaagtttgatatcaccttgttttt 158
>gnl|LJGI|TC68257
Length = 601
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 831 ggtctatgtagaaagtttggtatcaccttg 860
||||||||||||||||||| ||||||||||
Sbjct: 138 ggtctatgtagaaagtttgatatcaccttg 109