Miyakogusa Predicted Gene

Lj0g3v0123469.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0123469.1 tr|G7LHL2|G7LHL2_MEDTR Retinoblastoma-related
protein OS=Medicago truncatula GN=MTR_8g040560 PE=4 SV,73.91,0.096,
,CUFF.7415.1
         (189 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP070458 similar to UniRef100_A7PQJ9 Cluster: Chromosom...   165   1e-40
gnl|LJGI|TC59481 similar to UniRef100_A7PQJ9 Cluster: Chromosome...    86   9e-17
gnl|LJGI|TC64733 similar to UniRef100_Q9SLZ4 Cluster: Retinoblas...    60   5e-09
gnl|LJGI|TC82542                                                       52   1e-06

>gnl|LJGI|BP070458 similar to UniRef100_A7PQJ9 Cluster: Chromosome chr6 scaffold_25,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_25, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (10%)
          Length = 383

 Score =  165 bits (83), Expect = 1e-40
 Identities = 89/91 (97%)
 Strand = Plus / Minus

                                                                       
Query: 99  tcagccactcatgctttctttgcattcaacggcacaacaggatttggagaattgctgcta 158
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcagccactcatgctttctttggattcaacggcacaacaggatttggagaattgctgcta 311

                                          
Query: 159 tcaacgaagcaggagggtggaaagatagaat 189
           ||||||||| |||||||||||||||||||||
Sbjct: 310 tcaacgaagtaggagggtggaaagatagaat 280


>gnl|LJGI|TC59481 similar to UniRef100_A7PQJ9 Cluster: Chromosome chr6 scaffold_25,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_25, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (53%)
          Length = 1319

 Score = 85.7 bits (43), Expect = 9e-17
 Identities = 80/91 (87%), Gaps = 1/91 (1%)
 Strand = Plus / Plus

                                                                        
Query: 99   tcagccactcatgctttctttgcattcaacggcacaacagga-tttggagaattgctgct 157
            ||||| |||||||||||||||| |||||| |||||| ||||  ||||||| ||||| || 
Sbjct: 1136 tcagctactcatgctttctttggattcaatggcacagcaggtgtttggaggattgcagca 1195

                                           
Query: 158  atcaacgaagcaggagggtggaaagatagaa 188
            ||||| |||||||||||||||||||| ||||
Sbjct: 1196 atcaatgaagcaggagggtggaaagacagaa 1226


>gnl|LJGI|TC64733 similar to UniRef100_Q9SLZ4 Cluster: Retinoblastoma-related
           protein; n=1; Pisum sativum|Rep: Retinoblastoma-related
           protein - Pisum sativum (Garden pea), partial (20%)
          Length = 725

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atctgtttggagaaaccaagtatattctactgacaaatgtttcatcaatggggaatgcaa 64
           ||||||| ||||||||| |  |||||||||| ||| |||||||||||||||| |||| ||
Sbjct: 245 atctgttcggagaaaccgaacatattctactaacatatgtttcatcaatgggaaatggaa 304

             
Query: 65  tg 66
           ||
Sbjct: 305 tg 306


>gnl|LJGI|TC82542 
          Length = 986

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 66  gattttttcaaatagctttctcagtttttg 95
           |||||||||||| |||||||||||||||||
Sbjct: 825 gattttttcaaagagctttctcagtttttg 854