Miyakogusa Predicted Gene
- Lj0g3v0123329.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0123329.1 CUFF.7396.1
(400 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP043548 weakly similar to UniRef100_Q0DBY3 Cluster: Os... 341 2e-93
gnl|LJGI|TC71109 similar to UniRef100_A7PZQ8 Cluster: Chromosome... 103 8e-22
gnl|LJGI|TC68507 similar to UniRef100_O82343 Cluster: Expressed ... 86 2e-16
gnl|LJGI|TC57676 similar to UniRef100_O82343 Cluster: Expressed ... 68 4e-11
gnl|LJGI|TC59295 similar to UniRef100_A7PZQ8 Cluster: Chromosome... 58 4e-08
gnl|LJGI|FS361599 weakly similar to UniRef100_O82343 Cluster: Ex... 56 2e-07
>gnl|LJGI|BP043548 weakly similar to UniRef100_Q0DBY3 Cluster: Os06g0507400 protein;
n=2; Oryza sativa Japonica Group|Rep: Os06g0507400
protein - Oryza sativa subsp. japonica (Rice), partial
(6%)
Length = 509
Score = 341 bits (172), Expect = 2e-93
Identities = 185/188 (98%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 203 caaatgcaatcgtacatttaccattgagggggatggtgaggggaagtcttttggctgtaa 262
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 509 caaatgcaatcgtacatttaccattgagggg-atggtgaggggaagtcttttggcggtaa 451
Query: 263 aaacttgtttgcgatcccatggaattcgttcatggctgaggataatcgtttcttcattaa 322
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaacttgtttgcgattccatggaattcgttcatggctgaggataatcgtttcttcattaa 391
Query: 323 aggtgttctccatcttagagtcaagctcaccctcaaacattgatctcctattatttcata 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aggtgttctccatcttagagtcaagctcaccctcaaacattgatctcctattatttcata 331
Query: 383 gccttaac 390
||||||||
Sbjct: 330 gccttaac 323
>gnl|LJGI|TC71109 similar to UniRef100_A7PZQ8 Cluster: Chromosome chr15 scaffold_40,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_40, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 709
Score = 103 bits (52), Expect = 8e-22
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 260 taaaaacttgtttgcgatcccatggaattcgttcatggctgaggataatcgtttcttcat 319
|||||||||||||||||| ||||||||||| ||||| |||||||||| || ||| |||||
Sbjct: 378 taaaaacttgtttgcgattccatggaattccttcattgctgaggatagtcttttattcat 437
Query: 320 taaaggtgttctccatcttagagtcaagctcaccctcaaacatt 363
| | | ||||||||||||||||| | || ||||| |||||||||
Sbjct: 438 tgacgatgttctccatcttagagccgagttcaccatcaaacatt 481
>gnl|LJGI|TC68507 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (30%)
Length = 710
Score = 85.7 bits (43), Expect = 2e-16
Identities = 144/177 (81%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 28 catttcatttgggcgatcaagagttttttctatcagcagaatgcagcattgaccaacaaa 87
|||| |||||||| || |||| ||||| || |||||| | |||| ||| ||||||||||
Sbjct: 215 cattccatttgggtgagcaaggttttttcctttcagcacattgcaacatggaccaacaaa 274
Query: 88 gctctttccattgctttgggctgtatttgggaat---ggagagctcctcgggaagctgtg 144
||||||||||||||||||| ||| ||||||||| ||| | ||| | ||||| ||
Sbjct: 275 actctttccattgctttgggatgtttttgggaatgcaggataagggctcagaaagctttg 334
Query: 145 ctgtggactatgaattttctgcaaggtctaggccaacggaggagtttgttagcaagt 201
|| |||||||||||||| ||||||| | ||| ||||| | ||||||||||||||||
Sbjct: 335 ctctggactatgaatttgctgcaagatgtagcccaacaaatgagtttgttagcaagt 391
>gnl|LJGI|TC57676 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein - Arabidopsis
thaliana (Mouse-ear cress), partial (50%)
Length = 1259
Score = 67.9 bits (34), Expect = 4e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 263 aaacttgtttgcgatcccatggaattcgttcatggctgaggataatcgtttcttcattaa 322
|||||||||||| || ||||||| ||| ||| |||||||||||| || || |||||| ||
Sbjct: 960 aaacttgtttgcaattccatggacttcattcctggctgaggatagtctttacttcatcaa 1019
Query: 323 aggtgttctccatcttag 340
|| ||||||||||||||
Sbjct: 1020 tggcgttctccatcttag 1037
Score = 54.0 bits (27), Expect = 7e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 138 agctgtgctgtggactatgaattttctgcaaggtctaggccaacggaggagtttgttagc 197
|||| |||||| |||||||||||| | || |||||||| ||||| ||||| || || |||
Sbjct: 850 agctttgctgttgactatgaatttgccgcgaggtctagaccaactgaggaattcgtcagc 909
Query: 198 aagttcaaatgcaat 212
|||| |||| |||||
Sbjct: 910 aagtacaaaggcaat 924
>gnl|LJGI|TC59295 similar to UniRef100_A7PZQ8 Cluster: Chromosome chr15 scaffold_40,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_40, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (47%)
Length = 1623
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 147 gtggactatgaattttctgcaaggtctaggccaacggaggagtttgtta 195
||||||| ||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 1216 gtggactgtgaatttgctgcaaggtctaggccagcaaaggagtttgtta 1264
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 291 ttcatggctgaggataatcgtttcttcattaaaggtgttctccatctta 339
|||||||||||||||| || ||| |||||||| ||||||||||| ||||
Sbjct: 1345 ttcatggctgaggatagtccttttttcattaacggtgttctccacctta 1393
>gnl|LJGI|FS361599 weakly similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (31%)
Length = 752
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 279 ccatggaattcgttcatggctgaggataatcgtttcttcattaaaggtgttctccatctt 338
||||||| ||| ||||| |||||||||| || |||||||||||| | |||||||| |||
Sbjct: 154 ccatggacttcattcattgctgaggatagtcttttcttcattaacgacgttctccacctt 95
Query: 339 agag 342
||||
Sbjct: 94 agag 91