Miyakogusa Predicted Gene
- Lj0g3v0122989.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0122989.1 tr|I1MT00|I1MT00_SOYBN DNA-directed RNA
polymerase OS=Glycine max GN=Gma.48961 PE=3
SV=1,79.72,0,RNA_POL_PHAGE_2,DNA-directed RNA polymerase, phage-type;
RNA_POL_PHAGE_1,DNA-directed RNA polymerase,CUFF.7423.1
(2202 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS324084 similar to UniRef100_A7PFM9 Cluster: DNA-direc... 301 1e-80
gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-direct... 68 3e-10
>gnl|LJGI|FS324084 similar to UniRef100_A7PFM9 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (6%)
Length = 699
Score = 301 bits (152), Expect = 1e-80
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 139 ttggcgccgaatttgcctcgtgtgaaatccttgctgcttgggtggtttgagccgcttaag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttggcgccgaatttgcctcgtgtgaaatccttgctgcttgggtggtttgagccgcttaag 607
Query: 199 gaggccgtggaggctgagcagaaggcgcaccaggcgaggtctaagaagcagcaggcgtct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaggccgtggaggctgagcagaaggcgcaccaggcgaggtctaagaagcagcaggcgtct 667
Query: 259 attgctcctaatgtggactcgttgccggccgc 290
||||||||||||||||||||||||||||||||
Sbjct: 668 attgctcctaatgtggactcgttgccggccgc 699
Score = 135 bits (68), Expect = 1e-30
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 atgagagccgagcaggaggtgcgggaggctgaaacgttcgacgcgttacggcggagacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgagagccgagcaggaggtgcgggaggctgaaacgttcgacgcgttacggcggagacag 469
Query: 61 atcgaggc 68
||||||||
Sbjct: 470 atcgaggc 477
>gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (22%)
Length = 1297
Score = 67.9 bits (34), Expect = 3e-10
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 2050 gcacgaggcatcatgagctggcttggtgattgtgcgaaggtgattgcatatgaaaaccag 2109
|||||| | ||||||| ||||||||||| ||||| || || ||||||| |||||| ||
Sbjct: 193 gcacgaagtatcatgaattggcttggtgaatgtgcaaaagtaattgcatctgaaaatcaa 252
Query: 2110 gctgttcactggaccactcctcttggtcttcctgttgtacaaccatactgtaaa 2163
| || | |||||||||||||||||| |||||||| || ||||| ||| |||||
Sbjct: 253 ccggtgcgctggaccactcctcttggacttcctgtggtgcaaccttaccgtaaa 306