Miyakogusa Predicted Gene
- Lj0g3v0122329.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0122329.1 Non Chatacterized Hit- tr|H0XGW1|H0XGW1_OTOGA
Uncharacterized protein OS=Otolemur garnettii
GN=POLR2,37.41,2e-19,HRDC-like,HRDC-like; DNA-directed RNA-polymerase
II subunit,RNA polymerase II, Rpb4, core;
DNA-DIREC,NODE_25702_length_500_cov_362.506012.path1.1
(417 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69955 homologue to UniRef100_Q4ABY4 Cluster: 4D11_3; ... 827 0.0
gnl|LJGI|GO037359 homologue to UniRef100_Q4ABY4 Cluster: 4D11_3;... 460 e-129
>gnl|LJGI|TC69955 homologue to UniRef100_Q4ABY4 Cluster: 4D11_3; n=1; Brassica rapa
subsp. pekinensis|Rep: 4D11_3 - Brassica rapa subsp.
pekinensis (Chinese cabbage), complete
Length = 670
Score = 827 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Plus
Query: 1 atgtctggggaagaggaagaaaacgccgcagaactcaaaatcggagacgagtttttgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atgtctggggaagaggaagaaaacgccgcagaactcaaaatcggagacgagtttttgaag 103
Query: 61 gcaaagtgcttgatgaattgtgaagtttcattgattcttgagcacaagtatgagcagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gcaaagtgcttgatgaattgtgaagtttcattgattcttgagcacaagtatgagcagctt 163
Query: 121 caacagtcatctgatgatcccatgaatcaagtttctcaggtatttgaaaagtcattgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 caacagtcatctgatgatcccatgaatcaagtttctcaggtatttgaaaagtcattgcag 223
Query: 181 tatgtgaaacggtttagccggtataaaaatcctgatgctgttagacaagtccgagaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tatgtgaaacggtttagccggtataaaaatcctgatgctgttagacaagtccgagaaatt 283
Query: 241 cttgccagataccaattggccgagtttgagctgtgtgtcctaggcaatctttgcccggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cttgccagataccaattggccgagtttgagctgtgtgtcctaggcaatctttgcccggaa 343
Query: 301 actgtggaggaagctattgctatggttccatctatcaagacaagaggacgggctcaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 actgtggaggaagctattgctatggttccatctatcaagacaagaggacgggctcaggat 403
Query: 361 gatgaagcaattgagaaaatgttaaatgacctatcactcattaagaaatttgaataa 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gatgaagcaattgagaaaatgttaaatgacctatcactcattaagaaatttgaataa 460
>gnl|LJGI|GO037359 homologue to UniRef100_Q4ABY4 Cluster: 4D11_3; n=1; Brassica rapa
subsp. pekinensis|Rep: 4D11_3 - Brassica rapa subsp.
pekinensis (Chinese cabbage), partial (57%)
Length = 577
Score = 460 bits (232), Expect = e-129
Identities = 235/236 (99%)
Strand = Plus / Plus
Query: 1 atgtctggggaagaggaagaaaacgccgcagaactcaaaatcggagacgagtttttgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 atgtctggggaagaggaagaaaacgccgcagaactcaaaatcggagacgagtttttgaag 96
Query: 61 gcaaagtgcttgatgaattgtgaagtttcattgattcttgagcacaagtatgagcagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcaaagtgcttgatgaattgtgaagtttcattgattcttgagcacaagtatgagcagctt 156
Query: 121 caacagtcatctgatgatcccatgaatcaagtttctcaggtatttgaaaagtcattgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 157 caacagtcatctgatgatcccatgaatcaagtttctcaggtatttgaaaagtcgttgcag 216
Query: 181 tatgtgaaacggtttagccggtataaaaatcctgatgctgttagacaagtccgaga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tatgtgaaacggtttagccggtataaaaatcctgatgctgttagacaagtccgaga 272
Score = 85.7 bits (43), Expect = 2e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 237 aattcttgccagataccaattggccgagtttgagctgtgtgtc 279
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aattcttgccagataccaattggccgagtttgagctgtgtgtc 577