Miyakogusa Predicted Gene
- Lj0g3v0122109.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0122109.1 Non Chatacterized Hit- tr|A9NTU4|A9NTU4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.88,4e-16,seg,NULL; RRM,RNA recognition motif domain; RNA-BINDING
PROTEIN, PUTATIVE,NULL; FAMILY NOT NAMED,NUL,CUFF.7311.1
(942 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62706 similar to UniRef100_A7PLZ2 Cluster: Chromosome... 1867 0.0
gnl|LJGI|AV764987 weakly similar to UniRef100_O24306 Cluster: Ri... 137 1e-31
gnl|LJGI|TC58995 similar to UniRef100_A7PLZ2 Cluster: Chromosome... 96 5e-19
>gnl|LJGI|TC62706 similar to UniRef100_A7PLZ2 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1464
Score = 1867 bits (942), Expect = 0.0
Identities = 942/942 (100%)
Strand = Plus / Plus
Query: 1 atgtctatcacctccttcaaatccctcacaacaatggcggaatcatgtcttctctctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atgtctatcacctccttcaaatccctcacaacaatggcggaatcatgtcttctctctgca 174
Query: 61 ccctcctcactcttctacaacaaaaccaaacacctcttcttctcagctccctccagaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ccctcctcactcttctacaacaaaaccaaacacctcttcttctcagctccctccagaccc 234
Query: 121 ctcaaactccaactctcatccatcaacccttcacccgctctctccctcgccgccacaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctcaaactccaactctcatccatcaacccttcacccgctctctccctcgccgccacaacc 294
Query: 181 caccaccgctcttccgcgcccctcttcgtcgcccagacttccgactgggcccagcaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caccaccgctcttccgcgcccctcttcgtcgcccagacttccgactgggcccagcaagaa 354
Query: 241 gaagacaacacgctcaccctcgaagaccaagaagaaggagcagaaggtgtcagcgaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaagacaacacgctcaccctcgaagaccaagaagaaggagcagaaggtgtcagcgaaacc 414
Query: 301 gaagcgggttgggaacccaacggtgaagacgctgaaatcgagggtgctgaagaaggagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaagcgggttgggaacccaacggtgaagacgctgaaatcgagggtgctgaagaaggagaa 474
Query: 361 ggagaagaaggagattacgaggaaccaccagaagaggctaaactctttgttgggaacttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggagaagaaggagattacgaggaaccaccagaagaggctaaactctttgttgggaacttg 534
Query: 421 ccttatgatgctgatggtcacaaattggccgaacttttcaaccaagttggaaccgtggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccttatgatgctgatggtcacaaattggccgaacttttcaaccaagttggaaccgtggat 594
Query: 481 cttgcggaggttatttataacagggaaactgaccagagccgtggctttggatttgtcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cttgcggaggttatttataacagggaaactgaccagagccgtggctttggatttgtcacc 654
Query: 541 atgaaaacggttgaagatgctgagaaagctgtggataagttaaacggctatgatttcggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atgaaaacggttgaagatgctgagaaagctgtggataagttaaacggctatgatttcggt 714
Query: 601 ggtagactgttgactgttaataaggctgctccaagaggatctaggccagaacgtgcccct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ggtagactgttgactgttaataaggctgctccaagaggatctaggccagaacgtgcccct 774
Query: 661 cgtagctttgatgcccaacctgcctttagagtatatgttggtaatttgccatgggatttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cgtagctttgatgcccaacctgcctttagagtatatgttggtaatttgccatgggatttt 834
Query: 721 gacaatagtcagttggagcaggttttcagtgaacatggtaaggttgtgagtgcccgggta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gacaatagtcagttggagcaggttttcagtgaacatggtaaggttgtgagtgcccgggta 894
Query: 781 gtgtatgatagagaaactggacgatcacgtggctttggctttgtcacaatgtctgatgag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gtgtatgatagagaaactggacgatcacgtggctttggctttgtcacaatgtctgatgag 954
Query: 841 gcagaattgaatgatgccattgctgcccttgatggtcagagtttgggcgggaggacaatc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gcagaattgaatgatgccattgctgcccttgatggtcagagtttgggcgggaggacaatc 1014
Query: 901 agagtgaatgttgcagaagataggccaaggcgttccttttga 942
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 agagtgaatgttgcagaagataggccaaggcgttccttttga 1056
>gnl|LJGI|AV764987 weakly similar to UniRef100_O24306 Cluster: Ribonucleoprotein; n=2;
Pisum sativum|Rep: Ribonucleoprotein - Pisum sativum
(Garden pea), partial (12%)
Length = 161
Score = 137 bits (69), Expect = 1e-31
Identities = 102/113 (90%)
Strand = Plus / Minus
Query: 828 aatgtctgatgaggcagaattgaatgatgccattgctgcccttgatggtcagagtttggg 887
|||||||||| ||||||| || ||||| ||| || |||||| ||||||||||||||||
Sbjct: 161 aatgtctgataaggcagactttaatgaggccgctgtcgcccttcatggtcagagtttggg 102
Query: 888 cgggaggacaatcagagtgaatgttgcagaagataggccaaggcgttcctttt 940
|||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 101 cgggaggacaatcaaagtgaatgttgcagaagataggccaaggggttcctttt 49
>gnl|LJGI|TC58995 similar to UniRef100_A7PLZ2 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (67%)
Length = 1409
Score = 95.6 bits (48), Expect = 5e-19
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 743 ttttcagtgaacatggtaaggttgtgagtgcccgggtagtgtatgatagagaaactggac 802
||||||| ||||||||||| |||| || ||| ||| |||| || ||||| || || |
Sbjct: 828 ttttcagggaacatggtaatgttgagaatgctcggatagtcatggacagagagacgggtc 887
Query: 803 gatcacgtggctttggctttgtcacaatgtctgatgaggcagaattgaatgatgccattg 862
|||||||||| |||||||||||||||||||| ||| || || | |||| ||||||||
Sbjct: 888 gatcacgtggttttggctttgtcacaatgtccagtgaagctgatattaatggtgccattg 947
Query: 863 ctgcccttgatggtcagagtttgggcgggaggacaatcagagtgaatgttgc 914
|||| |||||||||||||| |||| ||||| |||||||| |||| ||||||
Sbjct: 948 ctgctcttgatggtcagagcttggatgggagaacaatcagggtgagtgttgc 999
Score = 73.8 bits (37), Expect = 2e-12
Identities = 124/153 (81%)
Strand = Plus / Plus
Query: 482 ttgcggaggttatttataacagggaaactgaccagagccgtggctttggatttgtcacca 541
|||| |||||||||||||| | || ||| |||| || ||||| ||||||||||| | ||
Sbjct: 552 ttgctgaggttatttataataaggccactaaccaaagtcgtgggtttggatttgttatca 611
Query: 542 tgaaaacggttgaagatgctgagaaagctgtggataagttaaacggctatgatttcggtg 601
||| |||| ||||||| |||||| ||| || | ||||| | |||||||| || | ||
Sbjct: 612 tgagtacggctgaagatcttgagaaggctttgaacaagttcagtggctatgaattggatg 671
Query: 602 gtagactgttgactgttaataaggctgctccaa 634
| ||| |||||||||||||||||||| ||||||
Sbjct: 672 gaagagtgttgactgttaataaggctactccaa 704