Miyakogusa Predicted Gene
- Lj0g3v0117349.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0117349.1 Non Chatacterized Hit- tr|I1II88|I1II88_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.77,5e-19,seg,NULL; Usp,UspA; no description,Rossmann-like
alpha/beta/alpha sandwich fold; Adenine nucleotide ,CUFF.6910.1
(675 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62475 similar to UniRef100_A7NVC5 Cluster: Chromosome... 1106 0.0
gnl|LJGI|DC595294 325 2e-88
gnl|LJGI|TC81335 similar to UniRef100_A7NVC5 Cluster: Chromosome... 242 2e-63
gnl|LJGI|TC79684 similar to UniRef100_A7NVC5 Cluster: Chromosome... 153 2e-36
gnl|LJGI|BP070964 UniRef100_Q0AVD3 Cluster: MutS-like mismatch r... 96 3e-19
gnl|LJGI|AV775403 homologue to UniRef100_A7NVC5 Cluster: Chromos... 84 1e-15
>gnl|LJGI|TC62475 similar to UniRef100_A7NVC5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (70%)
Length = 738
Score = 1106 bits (558), Expect = 0.0
Identities = 558/558 (100%)
Strand = Plus / Plus
Query: 118 gaagcgagtgtgaatcagatgaaaggtgttggaatgcatgggaatgaggaaaatgctgga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaagcgagtgtgaatcagatgaaaggtgttggaatgcatgggaatgaggaaaatgctgga 61
Query: 178 acagtggtgaagaagagagtgatggtggtggtggatcacacttcacattccaagcatgct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acagtggtgaagaagagagtgatggtggtggtggatcacacttcacattccaagcatgct 121
Query: 238 atgatgtgggctctcactcatgtagcaaataagggtgatttgctcactctgcttcatgtt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atgatgtgggctctcactcatgtagcaaataagggtgatttgctcactctgcttcatgtt 181
Query: 298 gtgcctcttgactcagcttctgattcttcttcttcttgttctgcacatcttgtcaattat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtgcctcttgactcagcttctgattcttcttcttcttgttctgcacatcttgtcaattat 241
Query: 358 ctcaggtccctttgcagagatttcaagcctgaggtggaagtggaagcacttgtaatccaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcaggtccctttgcagagatttcaagcctgaggtggaagtggaagcacttgtaatccaa 301
Query: 418 ggcccaaaattggccacagtgatgagccaagtgaagaagctggaggtctctgtcttggta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggcccaaaattggccacagtgatgagccaagtgaagaagctggaggtctctgtcttggta 361
Query: 478 ttgggccaaaagaagccatcttatctcttcagctgcctgtgtggaagcacaactagtagc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgggccaaaagaagccatcttatctcttcagctgcctgtgtggaagcacaactagtagc 421
Query: 538 agctctgaagagtttgctgaacattgcatcaacaaagcagaatgcttaacaataggagtg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agctctgaagagtttgctgaacattgcatcaacaaagcagaatgcttaacaataggagtg 481
Query: 598 aggaagagaagccaaggcacaaatggctacttcatcagcacaaggtggcagaagaacttc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aggaagagaagccaaggcacaaatggctacttcatcagcacaaggtggcagaagaacttc 541
Query: 658 tggctactggcctagatc 675
||||||||||||||||||
Sbjct: 542 tggctactggcctagatc 559
>gnl|LJGI|DC595294
Length = 463
Score = 325 bits (164), Expect = 2e-88
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 512 gcctgtgtggaagcacaactagtagcagctctgaagagtttgctgaacattgcatcaaca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcctgtgtggaagcacaactagtagcagctctgaagagtttgctgaacattgcatcaaca 288
Query: 572 aagcagaatgcttaacaataggagtgaggaagagaagccaaggcacaaatggctacttca 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aagcagaatgcttaacaataggagtgaggaagagaagccaaggcacaaatggctacttca 228
Query: 632 tcagcacaaggtggcagaagaacttctggctactggcctagatc 675
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcagcacaaggtggcagaagaacttctggctactggcctagatc 184
>gnl|LJGI|TC81335 similar to UniRef100_A7NVC5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 1056
Score = 242 bits (122), Expect = 2e-63
Identities = 238/275 (86%), Gaps = 5/275 (1%)
Strand = Plus / Plus
Query: 389 aggtggaagtggaagcacttgtaatccaaggcccaaaattggccacagtgatgagccaag 448
|||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||| |
Sbjct: 608 aggtggaagtggaaccacttgtaatccaaggaccgaaactggccacagtgatgagccagg 667
Query: 449 tgaagaagctggaggtctctgtcttggtattgggccaaaagaagccatcttatctcttca 508
|||||||||||||||||||||| ||||| | ||||||||||||||||||| ||| || |
Sbjct: 668 tgaagaagctggaggtctctgttctggtactaggccaaaagaagccatcttctctgttaa 727
Query: 509 gctgcctgtgtggaagca-caactagtagcagctctgaagagtttgctgaacattgcatc 567
|||| | ||||||| || |||| |||||| | || ||||||| || |||||||||
Sbjct: 728 gctgtatttgtggaaccagcaac----agcagcacagaggagtttgtggagcattgcatc 783
Query: 568 aacaaagcagaatgcttaacaataggagtgaggaagagaagccaaggcacaaatggctac 627
|| || ||||| ||||| ||||| ||||||||||||||| |||| ||||| |||||||||
Sbjct: 784 aataatgcagagtgcttgacaattggagtgaggaagagaggccatggcaccaatggctac 843
Query: 628 ttcatcagcacaaggtggcagaagaacttctggct 662
|| |||||||| |||||||||||||||||||||||
Sbjct: 844 tttatcagcactaggtggcagaagaacttctggct 878
Score = 58.0 bits (29), Expect = 7e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 218 cttcacattccaagcatgctatgatgtgggctctcactc-atgtagcaaataagggtgat 276
||||||||||||||||||||||| ||||||| ||||| | |||| | || ||||||||
Sbjct: 27 cttcacattccaagcatgctatgttgtgggcactcaccccatgttgttaacaagggtgac 86
Query: 277 ttgctcactctgcttca 293
||| | |||||||||||
Sbjct: 87 ttgttgactctgcttca 103
>gnl|LJGI|TC79684 similar to UniRef100_A7NVC5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 724
Score = 153 bits (77), Expect = 2e-36
Identities = 140/160 (87%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 364 tccctttgcagagatttcaagcctgaggtggaagtggaagcacttgtaatccaaggccca 423
|||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||| ||
Sbjct: 566 tccctttgcaaagattgcaagcctgatgtggaagtggaaccacttgtaatccaaggaccg 625
Query: 424 aaattggccacagtgatgagccaagtgaagaagctggaggtctctgtcttggtattgggc 483
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| | |
Sbjct: 626 aaactggccacagtgatgagccaggtgaagaagctggaggtctctgttctggtactag-- 683
Query: 484 caaaagaagccatcttatctcttcagctgcctgtgtggaa 523
| |||||||||||||| ||| || |||||| | |||||||
Sbjct: 684 ccaaagaagccatcttctctgttaagctgcatttgtggaa 723
Score = 65.9 bits (33), Expect = 3e-10
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 181 gtggtgaagaagagagtgatggtggtggtggatcacacttcacattccaagcatgctatg 240
||||||| ||| ||||| ||||| || || ||| | |||||||||||||||||||||||
Sbjct: 401 gtggtgaggaaaagagtcatggttgttgttgatggctcttcacattccaagcatgctatg 460
Query: 241 atgtgggctctcactcatgtagcaaataagggtgatttgctcactctgcttca 293
||||||| ||||| ||||| | || |||||||| ||| |||||||||||
Sbjct: 461 ttgtgggcactcacccatgttgttaacaagggtgacttgtcgactctgcttca 513
>gnl|LJGI|BP070964 UniRef100_Q0AVD3 Cluster: MutS-like mismatch repair protein ATPase
precursor; n=1; Syntrophomonas wolfei subsp., partial
(1%)
Length = 427
Score = 95.6 bits (48), Expect = 3e-19
Identities = 55/56 (98%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 337 tctgcacatcttgtcaattatctcaggtccctttgcagagatttcaagcctgaggt 392
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgcacatct-gtcaattatctcaggtccctttgcagagatttcaagcctgaggt 55
>gnl|LJGI|AV775403 homologue to UniRef100_A7NVC5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 462
Score = 83.8 bits (42), Expect = 1e-15
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 574 gcagaatgcttaacaataggagtgaggaagagaagccaaggcacaaatg-gctacttcat 632
||||| ||||| || || ||||||||||||||| |||||||||| ||| ||||||| ||
Sbjct: 276 gcagagtgcttgaccattggagtgaggaagagaggccaaggcacccatgcgctactttat 217
Query: 633 cagcacaaggtggcagaagaacttctggct 662
|||||| || ||||||||||||||||||||
Sbjct: 216 cagcactagctggcagaagaacttctggct 187