Miyakogusa Predicted Gene

Lj0g3v0116669.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0116669.1 Non Chatacterized Hit- tr|I1QCQ9|I1QCQ9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,55.13,0.000000000000007, ,CUFF.6854.1
         (234 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC599158 homologue to UniRef100_Q287W7 Cluster: ABC tra...   216   4e-56

>gnl|LJGI|DC599158 homologue to UniRef100_Q287W7 Cluster: ABC transporter family
           protein; n=1; Olimarabidopsis pumila|Rep: ABC
           transporter family protein - Olimarabidopsis pumila
           (Dwarf rocket) (Arabidopsis pumila), partial (13%)
          Length = 582

 Score =  216 bits (109), Expect = 4e-56
 Identities = 121/125 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaggtatcatgctggcaactgcactagtgcagtcaataacagtacaattggtgggccat 64
           |||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||
Sbjct: 89  aaaggtatcatgctggcagctacactagtgcagtcaataagagtacaatttgtgggccat 148

                                                                       
Query: 65  caactagggacattggaagaactgatccatcatccttgccagctaactttcctataagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 caactagggacattggaagaactgatccatcatccttgccagctaactttcctataagtt 208

                
Query: 125 caagg 129
           |||||
Sbjct: 209 caagg 213