Miyakogusa Predicted Gene

Lj0g3v0116369.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0116369.1 tr|Q6YWF9|Q6YWF9_ORYSJ Nucleoporin-like protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0018G11.20
,43.14,0.000000000000002,Nup160,Nucleoporin Nup120/160,CUFF.6831.1
         (496 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV780415 weakly similar to UniRef100_A7QFQ8 Cluster: Ch...   450   e-126

>gnl|LJGI|AV780415 weakly similar to UniRef100_A7QFQ8 Cluster: Chromosome undetermined
           scaffold_89, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_89, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (9%)
          Length = 544

 Score =  450 bits (227), Expect = e-126
 Identities = 277/293 (94%), Gaps = 3/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 141 ccgtgcctcttgccccgccatcggagatcctaccacttaccttatctggagaattcacaa 200
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 231 ccgtgcctcttgctccgccatcggagatcctcccacttaccttatctggagaattcacaa 290

                                                                       
Query: 201 ggcacatcctcaatctctcgaactgctggaggtctctgcttccaaagaatttcctcgttt 260
           ||  ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 291 ggaccattctcaatctcttgaactgctcgaggtctctgcttccaaagaatttcctcgttt 350

                                                                       
Query: 261 ggggctcagattcactttccccgaggcgctttgccccttcgcgttcatctgcaaaaacga 320
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 351 cgggctcagattcactttccccgacgcgctttgccccttcgcgttcatctgcaaaaacga 410

                                                                       
Query: 321 gattagtggcagttcttctaggttcccctacttgctttacgtgttgacagtgtctggcct 380
           || |||||||||   ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 411 gaatagtggcag---ttctaggttcccctacttgctttacgtgttgacagtgtctggctt 467

                                                                
Query: 381 ggcttacctcttgaggattcgaaatgtttctgcatatgcgtcgtgttctatta 433
           ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 468 ggcttacctcttgaggattcgaaatgtgtctgcatatgcgtcgtgtactatta 520



 Score =  161 bits (81), Expect = 5e-39
 Identities = 96/101 (95%)
 Strand = Plus / Plus

                                                                       
Query: 28  gcaatgggaactggttcgactttggtcgggaaggaagtccccataatcggaagcgacgct 87
           |||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||
Sbjct: 82  gcaatgggaactggttggacttgggacgcgaaggaagtccccataatcggaagcgacgct 141

                                                    
Query: 88  gttcgatggatcgacctctccgtcccttcctccgccaacat 128
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 142 gttcgctggatcgacctctccgtcccttcctccgccaacat 182