Miyakogusa Predicted Gene

Lj0g3v0114239.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0114239.1 tr|B9H9T9|B9H9T9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_819056 PE=4
SV=1,75.41,5e-19,GELSOLIN,Gelsolin; VILLIN 1-4,NULL; VILLIN,Gelsolin;
no description,NULL; Gelsolin,Gelsolin domain; ,gene.g8643.t1.1
         (654 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP055885 similar to UniRef100_A7PWH1 Cluster: Chromosom...   190   7e-48
gnl|LJGI|TC81058 similar to UniRef100_O81645 Cluster: Villin-3; ...    92   5e-18

>gnl|LJGI|BP055885 similar to UniRef100_A7PWH1 Cluster: Chromosome chr8 scaffold_34,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_34, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (16%)
          Length = 464

 Score =  190 bits (96), Expect = 7e-48
 Identities = 108/111 (97%), Gaps = 2/111 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  tagtatcgttgatggtgaggtcaagtctattgaaggtgaactatctaaatcactgctgga 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tagtatcgttgatggtgaggtcaagtctattgaaggtgaactatctaaatcactgctgga 50

                                                              
Query: 75  aaacaaccaatgctatttattggactgtggtgctgaagtatttgtctgggt 125
           |||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  aaaca--ccatgctatttattggactgtggtgctgaagtatttgtctgggt 1


>gnl|LJGI|TC81058 similar to UniRef100_O81645 Cluster: Villin-3; n=1; Arabidopsis
            thaliana|Rep: Villin-3 - Arabidopsis thaliana (Mouse-ear
            cress), partial (26%)
          Length = 1227

 Score = 91.7 bits (46), Expect = 5e-18
 Identities = 72/78 (92%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                        
Query: 85   tgctattta-ttggactgtggtgctgaagtatttgtctggg-ttggccgagtaacacaag 142
            ||||||||| ||||||||||||||||| |||| |||||||| ||||| | ||||||||||
Sbjct: 1150 tgctatttacttggactgtggtgctgaggtatatgtctggggttggcggggtaacacaag 1209

                              
Query: 143  ttgaagaacgaaaagcag 160
            ||||||||||||||||||
Sbjct: 1210 ttgaagaacgaaaagcag 1227