Miyakogusa Predicted Gene

Lj0g3v0114199.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0114199.1 Non Chatacterized Hit- tr|I1NCM0|I1NCM0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5088
PE=,64.18,4e-19,RING/U-box,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; SEVEN IN ABSENTIA HOMOLOG,Seven-in-,CUFF.6648.1
         (429 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71497 similar to UniRef100_A8W462 Cluster: SINA3; n=1...   184   3e-46
gnl|LJGI|TC81546 homologue to gb|AF036495.1|AF036495 Hamamelis v...    94   8e-19

>gnl|LJGI|TC71497 similar to UniRef100_A8W462 Cluster: SINA3; n=1; Medicago
           truncatula|Rep: SINA3 - Medicago truncatula (Barrel
           medic), partial (48%)
          Length = 694

 Score =  184 bits (93), Expect = 3e-46
 Identities = 159/181 (87%)
 Strand = Plus / Plus

                                                                       
Query: 116 ctcttaaacctaatgggaccgtttcaagcagtgttcgcgagcttttagagtgccctgtat 175
           ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |
Sbjct: 333 ctcttaaacctaatgggactgtttcaaacagtgttcgtgagcttttggagtgccctgtgt 392

                                                                       
Query: 176 gcctgaatgccatgtaccctccaatccatcagtgttcaaatggtcatactatatgctcag 235
           || ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||| |
Sbjct: 393 gcttgaatgccatgtatcctccaatccaccagtgttcaaatggtcacactttatgctcgg 452

                                                                       
Query: 236 gttgcaaacccagggtccataaccggtgccctacttgtagacatgagcttggtaacatca 295
            |||||||||||| |||||| |||| || |||| |||||  ||  |||||||||| ||||
Sbjct: 453 attgcaaacccagagtccatgaccgttgtcctatttgtatgcaccagcttggtaatatca 512

            
Query: 296 g 296
           |
Sbjct: 513 g 513



 Score =  147 bits (74), Expect = 6e-35
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                       
Query: 316 agcttggtaacatcagatgtctggcactggaaaaagtggctgcctctttggaacttccct 375
           |||||||||| ||||||||||||||| |||| || |||||||| ||||| |||||||| |
Sbjct: 498 agcttggtaatatcagatgtctggcattggagaaggtggctgcatctttagaacttcctt 557

                                                                 
Query: 376 gtaaatatcaaggttttgggtgcatcggtatatatccatattacagcaagctaa 429
           ||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 558 gtaaatatcaaggttttgggtgcatgggcatatacccatattacagcaagctaa 611


>gnl|LJGI|TC81546 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
           subunit 26S ribosomal RNA gene, partial sequence,
           partial (15%)
          Length = 838

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                       
Query: 116 ctcttaaacctaatgggaccgtttcaagcagtgttcgcgagcttttagagtgccctgtat 175
           ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |
Sbjct: 768 ctcttaaacctaatgggactgtttcaaacagtgttcgtgagcttttggagtgccctgtgt 827

                      
Query: 176 gcctgaatgcc 186
           || ||||||||
Sbjct: 828 gcttgaatgcc 838