Miyakogusa Predicted Gene

Lj0g3v0113539.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0113539.1 tr|Q9LMT2|Q9LMT2_ARATH At1g17980 OS=Arabidopsis
thaliana GN=F2H15.20 PE=2 SV=1,74.14,5e-19,PAP_RNA-bind,Poly(A)
polymerase, RNA-binding domain; PAP/Archaeal CCA-adding enzyme,
C-terminal doma,CUFF.6601.1
         (225 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS322881 similar to UniRef100_A7PGZ4 Cluster: Chromosom...   172   6e-43

>gnl|LJGI|FS322881 similar to UniRef100_A7PGZ4 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 688

 Score =  172 bits (87), Expect = 6e-43
 Identities = 149/169 (88%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttcaatgccatccacatcctggtgacttttctgacaaatcaagacctttatactgc 60
           ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct: 221 atgcttcaaagtcatccacatcctggtgaattttctgataaatctagacctttacactgc 280

                                                                       
Query: 61  tattacttcatgggtctgcaacggaagcaggg---tcctttcaatgaaggtgaacaattt 117
           | ||||||||||||||||||||| ||||||||   |||  ||||||| ||||||||||||
Sbjct: 281 tcttacttcatgggtctgcaacgtaagcagggagttccagtcaatgatggtgaacaattt 340

                                                            
Query: 118 gatataagattagctattgaaaaatttaagcacactatcaacatgtaca 166
           |||||||||||| || ||||| |||||||||| ||  ||||||||||||
Sbjct: 341 gatataagattaactgttgaagaatttaagcaaacagtcaacatgtaca 389