Miyakogusa Predicted Gene

Lj0g3v0113419.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0113419.1 Non Chatacterized Hit- tr|K3YRZ9|K3YRZ9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si017043,42.86,4e-19,seg,NULL; NHL REPEAT-CONTAINING PROTEIN,NULL;
FAMILY NOT NAMED,NULL; no description,Six-bladed beta-,CUFF.6592.1
         (462 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79541 similar to UniRef100_A7Q2F1 Cluster: Chromosome...    72   3e-12
gnl|LJGI|TC69428 similar to UniRef100_A7Q2F1 Cluster: Chromosome...    68   5e-11

>gnl|LJGI|TC79541 similar to UniRef100_A7Q2F1 Cluster: Chromosome chr1 scaffold_46,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_46, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (43%)
          Length = 869

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 184 atgatgaaatttgagagtggctacaatgtggaaacaatttttgatggaagtaagcttgga 243
           |||||||| |||||||||||||||| |||||||||  | ||||||||||| |||||||||
Sbjct: 337 atgatgaagtttgagagtggctacactgtggaaactgtgtttgatggaagcaagcttgga 396


>gnl|LJGI|TC69428 similar to UniRef100_A7Q2F1 Cluster: Chromosome chr1 scaffold_46,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_46, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (54%)
          Length = 1056

 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 343 tatagcagacccaaactgcttgctggatcacctgaaggttatattggacacatagatggg 402
           ||||||||||| || ||| | ||||||||| ||||||| |||  ||||||  | ||||||
Sbjct: 490 tatagcagaccaaagctggtggctggatcagctgaaggatattctggacatgttgatggg 549

                                     
Query: 403 aggcttagagaagctagaatgaacca 428
           | ||||||||| ||||||||||||||
Sbjct: 550 aagcttagagaggctagaatgaacca 575