Miyakogusa Predicted Gene

Lj0g3v0112049.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0112049.1 Non Chatacterized Hit- tr|B8AML5|B8AML5_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,35.46,4e-18,DNA-binding pseudobarrel domain,DNA-binding
pseudobarrel domain; no description,DNA-binding pseudoba,CUFF.6494.1
         (1320 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP029246                                                     391   e-108
gnl|LJGI|TC73245 similar to UniRef100_Q93ZB6 Cluster: Uroporphyr...    60   4e-08

>gnl|LJGI|BP029246 
          Length = 455

 Score =  391 bits (197), Expect = e-108
 Identities = 197/197 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1124 catcgcaagatgtaatactgcgctcagggaacggtgaatgggttgccagatacagctacc 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  catcgcaagatgtaatactgcgctcagggaacggtgaatgggttgccagatacagctacc 396

                                                                        
Query: 1184 atgctattcgccactctggaggacttactaatgggtggaagcattttgccgtggacaata 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  atgctattcgccactctggaggacttactaatgggtggaagcattttgccgtggacaata 336

                                                                        
Query: 1244 acctcgaagaatttgatgtttgcgtgcttacaccagctggcaaggtcaacaacacattga 1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  acctcgaagaatttgatgtttgcgtgcttacaccagctggcaaggtcaacaacacattga 276

                             
Query: 1304 ttgtagacgtgagcatt 1320
            |||||||||||||||||
Sbjct: 275  ttgtagacgtgagcatt 259


>gnl|LJGI|TC73245 similar to UniRef100_Q93ZB6 Cluster: Uroporphyrinogen decarboxylase;
            n=1; Arabidopsis thaliana|Rep: Uroporphyrinogen
            decarboxylase - Arabidopsis thaliana (Mouse-ear cress),
            partial (83%)
          Length = 1778

 Score = 60.0 bits (30), Expect = 4e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 1291 aacaacacattgattgtagacgtgagcatt 1320
            ||||||||||||||||||||||||||||||
Sbjct: 1428 aacaacacattgattgtagacgtgagcatt 1457