Miyakogusa Predicted Gene

Lj0g3v0111739.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0111739.1 tr|Q09085|Q09085_PHAVU Hydroxyproline-rich
glycoprotein (HRGP) (Fragment) OS=Phaseolus vulgaris
PE=2,70.97,0.000000000003,seg,NULL,CUFF.6782.1
         (283 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82766 similar to UniRef100_A7P093 Cluster: Chromosome...   155   2e-37

>gnl|LJGI|TC82766 similar to UniRef100_A7P093 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (40%)
          Length = 1247

 Score =  155 bits (78), Expect = 2e-37
 Identities = 169/198 (85%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gctttatgctccacctaaacactcaccctatggcatacctactaaactgaatgtgggaac 62
           |||| |||||||||||||| |||||||||    |||||||||||| ||||||| ||||||
Sbjct: 305 gcttcatgctccacctaaagactcacccttcaacatacctactaagctgaatgagggaac 364

                                                                       
Query: 63  cgacttgcacgtgaaatccaaggacaagtatgaagttgtgctcaaggcaaagccatttgc 122
           ||||||| |  | ||||||||  ||||||||||||||||||| ||  | |||||||||||
Sbjct: 365 cgacttgaagataaaatccaaaaacaagtatgaagttgtgctaaaatctaagccatttgc 424

                                                                       
Query: 123 ttatgcatcaaagaagcattttaaagaatgtgaaaagaccaagccttctccaactcctta 182
           ||| || || |||||||| ||| |||||||||| ||| | |||||||| |||||||||||
Sbjct: 425 ttacgcttcgaagaagca-tttgaagaatgtgataagcctaagccttcaccaactcctta 483

                             
Query: 183 ctactataagtcaccacc 200
           ||| || |||||||||||
Sbjct: 484 ctattacaagtcaccacc 501