Miyakogusa Predicted Gene

Lj0g3v0111659.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0111659.1 tr|A0EFD6|A0EFD6_PARTE Chromosome undetermined
scaffold_93, whole genome shotgun sequence OS=Paramec,32.3,7e-17,no
description,Tetratricopeptide-like helical; seg,NULL;
TPR-like,NULL,CUFF.6463.1
         (3483 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW628155                                                     337   3e-91

>gnl|LJGI|BW628155 
          Length = 464

 Score =  337 bits (170), Expect = 3e-91
 Identities = 325/376 (86%), Gaps = 3/376 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2550 gtttgtcctgagattggttgtctcagtgtgtttgcttcacctcagcacaaggaagtatgg 2609
            |||| |||||||||||||||| | | |||||||||||||||||| |    |||  |||  
Sbjct: 1    gtttttcctgagattggttgtattaatgtgtttgcttcacctcaactttgggagttatat 60

                                                                        
Query: 2610 agagacactttgcattttgttgggaaatagtcatataacctctcaactgccattggaatt 2669
            |||  ||||| ||| |||||||||||| |||||| |||||||| ||||||| ||||||||
Sbjct: 61   agaaccacttcgcaatttgttgggaaaaagtcatgtaacctctaaactgccgttggaatt 120

                                                                        
Query: 2670 ttgtgatgttcttatgaaaggaaggggaaacttgggtttggaagtcttttctgaggcctt 2729
            |||||||||||||| ||||||||||    || |||||||| |||||||| ||||||| ||
Sbjct: 121  ttgtgatgttcttaagaaaggaaggaatcacctgggtttgaaagtctttgctgaggcatt 180

                                                                        
Query: 2730 taaagtgattggcaatcccttggttattgtcaaggtaggcaacagttcttcagaaattgt 2789
            ||||||||| | |||||||||||||||||||||| |||| || | |||||| ||||||||
Sbjct: 181  taaagtgatagacaatcccttggttattgtcaagttagggaataattcttctgaaattgt 240

                                                                        
Query: 2790 ttgtccagatgctgtgtttgtagatttcatggtctgccggcaaaaagagctcatattgca 2849
             |||||||||||||||||||||||||| ||||| |||| ||||| |||||| ||||||||
Sbjct: 241  gtgtccagatgctgtgtttgtagatttaatggtatgcccgcaaagagagcttatattgca 300

                                                                        
Query: 2850 gatgttgtttccggatagagtcgacgacagcattggtggggaaaatgcagcaattattgt 2909
            ||||||||||||  |||||||   ||||||||  |||||||||||||||||| |||||||
Sbjct: 301  gatgttgtttccaaatagagt---cgacagcacgggtggggaaaatgcagcagttattgt 357

                            
Query: 2910 tgaatcttctgactca 2925
            ||||||||||||||||
Sbjct: 358  tgaatcttctgactca 373