Miyakogusa Predicted Gene
- Lj0g3v0111459.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0111459.1 Non Chatacterized Hit- tr|D7M1D1|D7M1D1_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,27.6,0.000000000000007,GB DEF: POLYUBIQUITIN-LIKE PROTEIN,NULL;
HECT DOMAIN UBIQUITIN-PROTEIN LIGASE,NULL;
UBIQUITIN,Ubiqui,CUFF.6449.1
(1972 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318776 weakly similar to UniRef100_A7QZX3 Cluster: Ch... 170 2e-41
gnl|LJGI|TC80277 similar to UniRef100_A7QZX3 Cluster: Chromosome... 170 2e-41
>gnl|LJGI|FS318776 weakly similar to UniRef100_A7QZX3 Cluster: Chromosome undetermined
scaffold_292, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_292,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (12%)
Length = 754
Score = 170 bits (86), Expect = 2e-41
Identities = 328/408 (80%), Gaps = 3/408 (0%)
Strand = Plus / Plus
Query: 195 caccatggttatgcaagcgtatcccgaagaaacagtccaatcgattctcgagcgtatcga 254
|||||| |||||||||||| |||| || || |||||||||||||||| |||||||||| |
Sbjct: 346 caccatcgttatgcaagcgcatcctgatgatacagtccaatcgattcacgagcgtatcca 405
Query: 255 gaccttgaagcgaatccctatttctgaacagaggttgattttcatggggaagctgcttca 314
|||||||| | |||||| ||| ||||||||| | || | || ||||||| ||||||
Sbjct: 406 agccttgaagggtatccctgttttcgaacagaggctaatctacaacgggaagcagcttca 465
Query: 315 gagggagaagactctcgccgaatgttccatccaaaacggcgtcaatcttcaactcgtttg 374
| |||| ||||||||||||||||||||||| ||| | || || ||||||||||||| |
Sbjct: 466 gtcggagcagactctcgccgaatgttccatcggaaaagacgccagtcttcaactcgttgg 525
Query: 375 tcgcatgcgccccaccggacaccctcaggcatggcaggtcataaacgacatggtctccgt 434
||||||||| |||||| ||||| || || ||||||||||| ||||||||||||||| |
Sbjct: 526 ccgcatgcgcagcaccggccacccacatgcctggcaggtcatcaacgacatggtctccct 585
Query: 435 cgttctcaaactctaccacggcggagttgttcccggcgctgtgaaaaccatcaagggctt 494
||| | ||||| |||| || | ||||| || |||| || ||||||||||| |
Sbjct: 586 tgttatacgactctgccacaacgaacctgttcacgacgctaacaagaccatcaagggtct 645
Query: 495 catcacgacctacctcaacatggcgccaaggattgacgacaaggattctgcttccgggta 554
|||||| | |||||||||| || | || | || | ||||| ||||||||||| |||||
Sbjct: 646 catcaccagctacctcaacttgtctccgaaga---atgacaacgattctgcttctgggta 702
Query: 555 ttttcagattttccggtcttgctccgccgtgcttgtctcgctgtatct 602
||||||||||||| ||| | |||| |||||||||||||| |||||
Sbjct: 703 ttttcagattttcatgtccgccaccgctgtgcttgtctcgctctatct 750
>gnl|LJGI|TC80277 similar to UniRef100_A7QZX3 Cluster: Chromosome undetermined
scaffold_292, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_292, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(28%)
Length = 932
Score = 170 bits (86), Expect = 2e-41
Identities = 137/154 (88%)
Strand = Plus / Plus
Query: 1810 actttagaagacataaaggatgcagatccaaacttatatactagatgcaagcaaatatta 1869
||||||||||| | |||||||||||||| | | |||| ||| ||||||||||||||
Sbjct: 1 actttagaagatgtgaaggatgcagatcctttcctgtatagtagctgcaagcaaatattg 60
Query: 1870 gacatggattctgatttcattgattcagatgcattaggactgacttttgttagagaggcg 1929
|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 61 gagatggattctgacttcattgattcagatgcattaggactaacttttgttagagaggtg 120
Query: 1930 gaggaattaggacacacaaaagtggttgagctct 1963
||||| |||||| |||||||||||||||||||||
Sbjct: 121 gaggagttaggagacacaaaagtggttgagctct 154