Miyakogusa Predicted Gene

Lj0g3v0111189.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0111189.1 CUFF.6424.1
         (300 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AU251920                                                     313   3e-85
gnl|LJGI|FS333417 weakly similar to UniRef100_A6PV85 Cluster: Ch...   186   5e-47
gnl|LJGI|TC67005                                                       60   8e-09
gnl|LJGI|FS328260 similar to UniRef100_Q1H445 Cluster: Transcrip...    50   8e-06

>gnl|LJGI|AU251920 
          Length = 281

 Score =  313 bits (158), Expect = 3e-85
 Identities = 178/182 (97%), Gaps = 2/182 (1%)
 Strand = Plus / Minus

                                                                       
Query: 85  ataaaagaaagaggcacagggaggaagtatacaatgaatagaaattggatggacagtaat 144
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 278 ataaaagaaagaggcacagggaggaagtatacaatgaatagatattggatggacagtaat 219

                                                                       
Query: 145 gaaagcccttttcgtcaatccctttatcttta-tgttctaataaagaaaaacgtga-atg 202
           |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 218 gaaagcccttatcgtcaatccctttatctttagtgttctaataaagaaaaacgtgatatg 159

                                                                       
Query: 203 aagtcttgatgaaaattcgagaacttcgaaaggaaggcatagaagaaaatgggttgaaag 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aagtcttgatgaaaattcgagaacttcgaaaggaaggcatagaagaaaatgggttgaaag 99

             
Query: 263 ga 264
           ||
Sbjct: 98  ga 97


>gnl|LJGI|FS333417 weakly similar to UniRef100_A6PV85 Cluster: Chromosome segregation
           ATPases-like protein; n=1; Victivallis vadensis ATCC
           BAA-548|Rep: Chromosome segregation ATPases-like protein
           - Victivallis vadensis ATCC BAA-548, partial (3%)
          Length = 446

 Score =  186 bits (94), Expect = 5e-47
 Identities = 109/114 (95%), Gaps = 5/114 (4%)
 Strand = Plus / Minus

                                                                       
Query: 20  ccttctactcaaagcacgaacaaaatggacctgaaacagtttcataccaaagaagattag 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ccttctactcaaagcacgaacaaaatggacctgaaacagtttcataccaaagaagattag 55

                                                                 
Query: 80  aaacaataaaagaaagaggcac-----agggaggaagtatacaatgaatagaaa 128
           ||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 54  aaacaataaaagaaagaggcacagggcagggaggaagtatacaatgaatagaaa 1


>gnl|LJGI|TC67005 
          Length = 1733

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 20  ccttctactcaaagcacgaacaaaatggac 49
           ||||||||||||||||||||||||||||||
Sbjct: 313 ccttctactcaaagcacgaacaaaatggac 284


>gnl|LJGI|FS328260 similar to UniRef100_Q1H445 Cluster: Transcriptional regulator,
           TetR family; n=1; Methylobacillus flagellatus KT|Rep:
           Transcriptional regulator, TetR family - Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875), partial
           (7%)
          Length = 501

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 260 aaggagaagggatgagaagattgttcttacaggattgaaga 300
           |||||||| ||| ||||||||||||||||| ||||| ||||
Sbjct: 199 aaggagaacggaggagaagattgttcttactggattaaaga 159