Miyakogusa Predicted Gene

Lj0g3v0111109.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0111109.1 tr|D9ZHD0|D9ZHD0_HYPPE Retrotransposon protein
OS=Hypericum perforatum GN=RT3 PE=4
SV=1,47.06,0.88,seg,NULL,gene.g8387.t1.1
         (534 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS351529                                                     385   e-106

>gnl|LJGI|FS351529 
          Length = 703

 Score =  385 bits (194), Expect = e-106
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 341 ttcagcttacgattaatcaatttttctggggaggagatgtcactattcggaagatgaatt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttcagcttacgattaatcaatttttctggggaggagatgtcactattcggaagatgaatt 343

                                                                       
Query: 401 ggatgtcctgggagaagcttgagaggcctaagaagggaggagagaccagaggcgcgacct 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggatgtcctgggagaagcttgagaggcctaagaagggaggagagaccagaggcgcgacct 403

                                                                       
Query: 461 gctggaccagcagcagcatgagcttccagtatggaaaagagacgctctggagctcaaaag 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gctggaccagcagcagcatgagcttccagtatggaaaagagacgctctggagctcaaaag 463

                         
Query: 521 aggagttattgtaa 534
           ||||||||||||||
Sbjct: 464 aggagttattgtaa 477



 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                              
Query: 295 aagatgagcagaaaagaaaaggaagcactagaacaaattattgcaattcag 345
           |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 167 aagatgagcagaaaagaaaaggaagcactagaacaaattattgcaagtcag 217