Miyakogusa Predicted Gene

Lj0g3v0110849.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0110849.1 tr|A2Q365|A2Q365_MEDTR BTB/POZ domain-containing
protein OS=Medicago truncatula GN=MTR_2g048390
PE=4,92.28,0,Broad-Complex, Tramtrack and Bric a brac,BTB/POZ-like;
NPH3,NPH3; BTB,BTB/POZ; no description,BTB/PO,CUFF.6406.1
         (816 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV407064 similar to UniRef100_A2Q365 Cluster: BTB/POZ; ...   190   9e-48
gnl|LJGI|BP041933 homologue to UniRef100_A2Q365 Cluster: BTB/POZ...   119   3e-26
gnl|LJGI|TC75649 similar to UniRef100_A7R357 Cluster: Chromosome...    56   4e-07
gnl|LJGI|TC67371 similar to UniRef100_A7R357 Cluster: Chromosome...    56   4e-07
gnl|LJGI|BP042810 similar to UniRef100_A7R357 Cluster: Chromosom...    54   1e-06

>gnl|LJGI|AV407064 similar to UniRef100_A2Q365 Cluster: BTB/POZ; Superoxide dismutase,
           copper/zinc binding; NPH3; n=1; Medicago truncatula|Rep:
           BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3
           - Medicago truncatula (Barrel medic), partial (18%)
          Length = 356

 Score =  190 bits (96), Expect = 9e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 721 caggagatcattgctggttctcttgctttctatgctaaaatgtatctaccagggttgaat 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caggagatcattgctggttctcttgctttctatgctaaaatgtatctaccagggttgaat 60

                                               
Query: 781 agacgccaggtttctggtgagtccagcacccgtctg 816
           ||||||||||||||||||||||||||||||||||||
Sbjct: 61  agacgccaggtttctggtgagtccagcacccgtctg 96


>gnl|LJGI|BP041933 homologue to UniRef100_A2Q365 Cluster: BTB/POZ; Superoxide
           dismutase, copper/zinc binding; NPH3; n=1; Medicago
           truncatula|Rep: BTB/POZ; Superoxide dismutase,
           copper/zinc binding; NPH3 - Medicago truncatula (Barrel
           medic), partial (3%)
          Length = 472

 Score =  119 bits (60), Expect = 3e-26
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcttgcgtgaaattgggttccaaagctgatgcgttccaccgtcaagggcaggcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atggcttgcgtgaaattgggttccaaagctgatgcgttccaccgtcaagggcaggcctgg 472


>gnl|LJGI|TC75649 similar to UniRef100_A7R357 Cluster: Chromosome undetermined
           scaffold_484, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_484,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (8%)
          Length = 836

 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 47  aagggcaggcctggttctgcacaaccgggctacctagtgatatagttgttgaagttggtg 106
           ||||||| || |||||||| ||||| ||  | |||||||| || ||||| ||||| | ||
Sbjct: 544 aagggcaagcatggttctgtacaactggattgcctagtgacatggttgtggaagtggatg 603

                                       
Query: 107 agatgtccttccatcttcacaagtttcc 134
           | ||| |||||||||| |||||||||||
Sbjct: 604 acatgaccttccatctccacaagtttcc 631


>gnl|LJGI|TC67371 similar to UniRef100_A7R357 Cluster: Chromosome undetermined
           scaffold_484, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_484,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (28%)
          Length = 1270

 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 79  cctagtgatatagttgttgaagttggtgagatgtccttccatcttcacaagtttcc 134
           |||||||| || ||||||||||| | ||| ||| |||||||||| |||||||||||
Sbjct: 505 cctagtgacattgttgttgaagtggatgacatgaccttccatctccacaagtttcc 560


>gnl|LJGI|BP042810 similar to UniRef100_A7R357 Cluster: Chromosome undetermined
           scaffold_484, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_484,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (12%)
          Length = 503

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                       
Query: 47  aagggcaggcctggttctgcacaaccgggctacctagtgatatagttgttgaagttggtg 106
           ||||||| || |||||||| ||||| ||  | |||||||| || ||||||||||| | ||
Sbjct: 327 aagggcaagcatggttctgtacaactggattgcctagtgacattgttgttgaagtggatg 268

                                  
Query: 107 agatgtccttccatcttcacaag 129
           | ||| |||||||||| ||||||
Sbjct: 267 acatgaccttccatctccacaag 245