Miyakogusa Predicted Gene
- Lj0g3v0110789.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0110789.1 Non Chatacterized Hit- tr|K3XMR4|K3XMR4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si003187,85.62,0,seg,NULL; HISTONE_H2A,Histone H2A; Histone,Histone
core; HISTONE H2A,NULL; Histone 2A,Histone H2A; n,CUFF.6414.1
(459 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59651 homologue to UniRef100_Q2HU65 Cluster: Probable... 910 0.0
gnl|LJGI|TC60307 homologue to UniRef100_Q2HU65 Cluster: Probable... 434 e-121
gnl|LJGI|TC61686 homologue to UniRef100_A2WQG7 Cluster: Probable... 418 e-116
gnl|LJGI|AV416115 similar to UniRef100_A2Q335 Cluster: Histone H... 131 4e-30
gnl|LJGI|BW599450 UniRef100_A7P108 Cluster: Histone H2A; n=1; Vi... 74 8e-13
gnl|LJGI|TC68862 UniRef100_A7P108 Cluster: Histone H2A; n=1; Vit... 74 8e-13
gnl|LJGI|TC61188 homologue to UniRef100_A5BCX3 Cluster: Histone ... 68 5e-11
gnl|LJGI|TC60728 homologue to UniRef100_A7R219 Cluster: Histone ... 60 1e-08
gnl|LJGI|TC74486 similar to UniRef100_A5C2R7 Cluster: Histone H2... 52 3e-06
>gnl|LJGI|TC59651 homologue to UniRef100_Q2HU65 Cluster: Probable histone H2A.2; n=1;
Medicago truncatula|Rep: Probable histone H2A.2 -
Medicago truncatula (Barrel medic), partial (93%)
Length = 740
Score = 910 bits (459), Expect = 0.0
Identities = 459/459 (100%)
Strand = Plus / Plus
Query: 1 atggacaccaccacaggaaaggcaaagaaaggcgccggagggagaaagatcggcggccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atggacaccaccacaggaaaggcaaagaaaggcgccggagggagaaagatcggcggccca 136
Query: 61 aagaagaagccagtttccagatccatcaaagccggtctccaattccccgtcggaagaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aagaagaagccagtttccagatccatcaaagccggtctccaattccccgtcggaagaatc 196
Query: 121 ggccgctacttgaagaaaggccgatacgctcagcgcgtgggaaccggcgctccggtgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggccgctacttgaagaaaggccgatacgctcagcgcgtgggaaccggcgctccggtgtac 256
Query: 181 ctcgccgctgttctggagtatctcgcggctgaggtgcttgaattggctggaaacgcggcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcgccgctgttctggagtatctcgcggctgaggtgcttgaattggctggaaacgcggcg 316
Query: 241 cgtgacaacaagaagaacaggattatcccgaggcatgtgctgcttgctgtgaggaacgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgtgacaacaagaagaacaggattatcccgaggcatgtgctgcttgctgtgaggaacgat 376
Query: 301 gaggagcttgggaagttgcttgctggtgtgactattgctcatggcggtgttcttccgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaggagcttgggaagttgcttgctggtgtgactattgctcatggcggtgttcttccgaat 436
Query: 361 attaaccctgtgcttctgccgaagaagactgctgagaaggttgccaaggagcctaagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attaaccctgtgcttctgccgaagaagactgctgagaaggttgccaaggagcctaagtct 496
Query: 421 ccggctaagaagggtgtgaaatcgcctaagaaagcttag 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccggctaagaagggtgtgaaatcgcctaagaaagcttag 535
>gnl|LJGI|TC60307 homologue to UniRef100_Q2HU65 Cluster: Probable histone H2A.2; n=1;
Medicago truncatula|Rep: Probable histone H2A.2 -
Medicago truncatula (Barrel medic), partial (95%)
Length = 729
Score = 434 bits (219), Expect = e-121
Identities = 381/435 (87%)
Strand = Plus / Plus
Query: 25 aagaaaggcgccggagggagaaagatcggcggcccaaagaagaagccagtttccagatcc 84
|||||||| |||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct: 121 aagaaaggtgccggaggaagaaaagctggtggcccgaagaagaagccagtttcgagatcg 180
Query: 85 atcaaagccggtctccaattccccgtcggaagaatcggccgctacttgaagaaaggccga 144
| || || ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 181 gtgaaggctggtctccaattccccgtcggaagaatcggacggtacttgaagaaaggaagg 240
Query: 145 tacgctcagcgcgtgggaaccggcgctccggtgtacctcgccgctgttctggagtatctc 204
|| |||||||| || |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 241 tatgctcagcgtgtcggaaccggtgctccggtgtaccttgctgctgttctggagtatctc 300
Query: 205 gcggctgaggtgcttgaattggctggaaacgcggcgcgtgacaacaagaagaacaggatt 264
|| |||||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct: 301 gctgctgaggtgcttgagttggctggaaatgctgctcgtgacaacaagaagaacaggatt 360
Query: 265 atcccgaggcatgtgctgcttgctgtgaggaacgatgaggagcttgggaagttgcttgct 324
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 atcccgaggcatgttctgcttgctgtgaggaacgatgaggagcttgggaaattgcttgct 420
Query: 325 ggtgtgactattgctcatggcggtgttcttccgaatattaaccctgtgcttctgccgaag 384
|| || || ||||||||||| ||||||||||| || || ||||||||||||||||| |||
Sbjct: 421 ggagtcaccattgctcatggtggtgttcttcccaacatcaaccctgtgcttctgcctaag 480
Query: 385 aagactgctgagaaggttgccaaggagcctaagtctccggctaagaagggtgtgaaatcg 444
|||||||||||||| | | | |||||| | |||||||| ||||||||| || || ||
Sbjct: 481 aagactgctgagaaagctcctaaggagtcaaagtctcctcctaagaaggctggaaagtct 540
Query: 445 cctaagaaagcttag 459
|| ||||||||||||
Sbjct: 541 cccaagaaagcttag 555
>gnl|LJGI|TC61686 homologue to UniRef100_A2WQG7 Cluster: Probable histone H2A.5; n=2;
Oryza sativa|Rep: Probable histone H2A.5 - Oryza sativa
subsp. indica (Rice), partial (94%)
Length = 718
Score = 418 bits (211), Expect = e-116
Identities = 391/451 (86%)
Strand = Plus / Plus
Query: 6 caccaccacaggaaaggcaaagaaaggcgccggagggagaaagatcggcggcccaaagaa 65
|||| |||||||||||| ||||| ||||||| || || || ||| ||||| |||||
Sbjct: 77 caccgccacaggaaaggtcaagaagggcgccgccggaaggaaagccggaggccccaagaa 136
Query: 66 gaagccagtttccagatccatcaaagccggtctccaattccccgtcggaagaatcggccg 125
|||| ||||||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct: 137 gaagtcagtttccagatcggtgaaggccggtctccaattccccgtcggaagaatcggacg 196
Query: 126 ctacttgaagaaaggccgatacgctcagcgcgtgggaaccggcgctccggtgtacctcgc 185
|||| ||||||| || | ||||||||||| || ||| | || ||||| |||||||| ||
Sbjct: 197 ctacctgaagaagggaaggtacgctcagcgtgttggatctggtgctcctgtgtaccttgc 256
Query: 186 cgctgttctggagtatctcgcggctgaggtgcttgaattggctggaaacgcggcgcgtga 245
|||||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||
Sbjct: 257 tgctgttcttgagtatctcgctgctgaggtgcttgagttggctggaaatgctgctcgtga 316
Query: 246 caacaagaagaacaggattatcccgaggcatgtgctgcttgctgtgaggaacgatgagga 305
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 317 caacaagaagaacaggattatcccgaggcacgttcttcttgctgtgaggaacgatgagga 376
Query: 306 gcttgggaagttgcttgctggtgtgactattgctcatggcggtgttcttccgaatattaa 365
||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || || ||
Sbjct: 377 gcttgggaaattgcttgctggtgtgaccattgctcatggtggtgttcttcccaacatcaa 436
Query: 366 ccctgtgcttctgccgaagaagactgctgagaaggttgccaaggagcctaagtctccggc 425
||||||||||||||| ||||||||||||||||| | | | ||||| ||||||||||| ||
Sbjct: 437 ccctgtgcttctgcctaagaagactgctgagaaagctcctaaggaacctaagtctccagc 496
Query: 426 taagaagggtgtgaaatcgcctaagaaagct 456
||||||| || ||||| || |||||||||
Sbjct: 497 gaagaaggctgcaaaatctcccaagaaagct 527
>gnl|LJGI|AV416115 similar to UniRef100_A2Q335 Cluster: Histone H2A; Histone-fold;
n=1; Medicago truncatula|Rep: Histone H2A; Histone-fold
- Medicago truncatula (Barrel medic), partial (85%)
Length = 430
Score = 131 bits (66), Expect = 4e-30
Identities = 144/170 (84%)
Strand = Plus / Plus
Query: 133 aagaaaggccgatacgctcagcgcgtgggaaccggcgctccggtgtacctcgccgctgtt 192
||||||||||| || ||||||| | || ||||| |||||| | |||||||||||||||
Sbjct: 188 aagaaaggccgttattctcagcgtttaggcaccggagctccgatctacctcgccgctgtt 247
Query: 193 ctggagtatctcgcggctgaggtgcttgaattggctggaaacgcggcgcgtgacaacaag 252
|| ||||||||||| || ||||| | ||||||||||| ||||| || || |||||||||
Sbjct: 248 ctcgagtatctcgccgccgaggttttggaattggctgggaacgctgcacgagacaacaag 307
Query: 253 aagaacaggattatcccgaggcatgtgctgcttgctgtgaggaacgatga 302
||||||||||| | ||| ||||||||| ||||||| |||||||| |||||
Sbjct: 308 aagaacaggatcaacccaaggcatgtgttgcttgcggtgaggaatgatga 357
>gnl|LJGI|BW599450 UniRef100_A7P108 Cluster: Histone H2A; n=1; Vitis vinifera|Rep:
Histone H2A - Vitis vinifera (Grape), partial (93%)
Length = 455
Score = 73.8 bits (37), Expect = 8e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 164 ccggcgctccggtgtacctcgccgctgttctggagtatctcgcggctgaggtgcttgaat 223
||||||| || || ||||||||||| || || || |||||||| |||||||| |||||||
Sbjct: 217 ccggcgcccccgtctacctcgccgccgtccttgaatatctcgccgctgaggttcttgaat 276
Query: 224 tggctggaaacgc 236
|||||||||||||
Sbjct: 277 tggctggaaacgc 289
>gnl|LJGI|TC68862 UniRef100_A7P108 Cluster: Histone H2A; n=1; Vitis vinifera|Rep:
Histone H2A - Vitis vinifera (Grape), partial (93%)
Length = 960
Score = 73.8 bits (37), Expect = 8e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 164 ccggcgctccggtgtacctcgccgctgttctggagtatctcgcggctgaggtgcttgaat 223
||||||| || || ||||||||||| || || || |||||||| |||||||| |||||||
Sbjct: 267 ccggcgcccccgtctacctcgccgccgtccttgaatatctcgccgctgaggttcttgaat 326
Query: 224 tggctggaaacgc 236
|||||||||||||
Sbjct: 327 tggctggaaacgc 339
>gnl|LJGI|TC61188 homologue to UniRef100_A5BCX3 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
partial (96%)
Length = 719
Score = 67.9 bits (34), Expect = 5e-11
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 169 gctccggtgtacctcgccgctgttctggagtatctcgcggctgaggtgcttgaattggct 228
||||| ||||| ||| | ||||| || ||||||||||| |||||||| | |||||||||
Sbjct: 274 gctcctgtgtatctctctgctgtgcttgagtatctcgccgctgaggttttggaattggct 333
Query: 229 ggaaacgcggcgcgtgacaacaagaagaacaggattatcccgaggcatgtgctgcttgct 288
|| ||||| || | |||||||||||||| | ||| | || ||||| | | ||||||
Sbjct: 334 gggaacgctgctagggacaacaagaagaatcgtattgttccaaggcacattcaacttgct 393
Query: 289 gtgaggaacgatgaggag 306
||||||||||||||||||
Sbjct: 394 gtgaggaacgatgaggag 411
>gnl|LJGI|TC60728 homologue to UniRef100_A7R219 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
complete
Length = 718
Score = 60.0 bits (30), Expect = 1e-08
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 87 caaagccggtctccaattccccgtcggaagaatcggccgctacttgaagaaaggccgata 146
||||||||| ||||||||||||||||| | |||| ||| | | | ||| ||| |||
Sbjct: 155 caaagccggcctccaattccccgtcggccgtatcgcccggttcctcaaggctggcaaata 214
Query: 147 cgctcagcgcgtgggaaccggcgctccggtgtacctcgccgctgttctggagtatctcgc 206
||| ||||||| || ||||||| || || ||||||||||| || || |||||||| ||
Sbjct: 215 cgccgagcgcgtcggtgccggcgcccccgtctacctcgccgccgtcctcgagtatctagc 274
Query: 207 ggctgaggtgcttgaattggctggaaacgc 236
|| ||||| ||||| ||||||||||||||
Sbjct: 275 cgccgaggttcttgagttggctggaaacgc 304
>gnl|LJGI|TC74486 similar to UniRef100_A5C2R7 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
partial (95%)
Length = 618
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 76 tccagatccatcaaagccggtctccaattccccgtcgg 113
||||||||| ||||||||| |||||||||||||||||
Sbjct: 118 tccagatcctccaaagccggcctccaattccccgtcgg 155